Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MST16_RS14640 Genome accession   NZ_CP094541
Coordinates   2969735..2970367 (+) Length   210 a.a.
NCBI ID   WP_180064821.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2964735..2975367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS14625 (MST16_14595) - 2965956..2966552 (-) 597 WP_180010516.1 methyltransferase domain-containing protein -
  MST16_RS14630 (MST16_14600) - 2966704..2967483 (-) 780 WP_180064820.1 NAD-dependent epimerase/dehydratase family protein -
  MST16_RS14635 (MST16_14605) recG 2967543..2969588 (+) 2046 WP_078189293.1 ATP-dependent DNA helicase RecG -
  MST16_RS14640 (MST16_14610) comF 2969735..2970367 (+) 633 WP_180064821.1 ComF family protein Machinery gene
  MST16_RS14645 (MST16_14615) - 2970414..2970821 (-) 408 WP_180064822.1 NUDIX domain-containing protein -
  MST16_RS14650 (MST16_14620) - 2970821..2971426 (-) 606 WP_180064823.1 TIGR00730 family Rossman fold protein -
  MST16_RS14655 (MST16_14625) - 2971582..2972595 (+) 1014 WP_078189297.1 CorA family divalent cation transporter -
  MST16_RS14660 (MST16_14630) - 2972674..2972934 (-) 261 WP_171525932.1 lipid asymmetry maintenance protein MlaB -
  MST16_RS14665 (MST16_14635) - 2972974..2973609 (-) 636 WP_180064824.1 phospholipid-binding protein MlaC -
  MST16_RS14670 (MST16_14640) - 2973627..2974307 (-) 681 WP_168379104.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MST16_RS14675 (MST16_14645) mlaE 2974307..2975086 (-) 780 WP_180064825.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24356.39 Da        Isoelectric Point: 8.8049

>NTDB_id=670096 MST16_RS14640 WP_180064821.1 2969735..2970367(+) (comF) [Acinetobacter sp. YH16040_T]
MLQSIQHLIQKGIQSVSPCLLCGIDRQQHHSLCTDCWAQLPWFKQAVDRHEHSISCAFYYDFPIDRIIQSYKYEQQLHYQ
NLLAQSLLSLRLARVQAIVPMPISVERLKDRGYNQMLLVAHMMAKQLRIPVWQPVIRQAQHAQKGLSRLERLENIEQQFI
INPTEKRRFRKVLIIDDVVTTGSSIHALSELLHQLHCTQVYAACIAAAQP

Nucleotide


Download         Length: 633 bp        

>NTDB_id=670096 MST16_RS14640 WP_180064821.1 2969735..2970367(+) (comF) [Acinetobacter sp. YH16040_T]
ATGCTCCAATCTATCCAACACCTCATCCAAAAAGGAATACAGAGCGTTTCCCCTTGCCTGCTCTGCGGTATCGATCGACA
ACAACATCATTCGCTTTGTACCGACTGCTGGGCACAACTGCCTTGGTTTAAACAAGCGGTTGATCGCCATGAACACAGCA
TCTCTTGTGCCTTTTACTATGATTTCCCTATAGATCGCATCATTCAAAGCTATAAGTATGAGCAACAATTGCACTATCAA
AATTTACTGGCACAGAGCCTTTTAAGCTTGCGCTTAGCTAGGGTTCAAGCCATCGTCCCCATGCCTATTTCAGTAGAACG
CCTTAAAGACCGTGGGTATAACCAAATGCTGCTCGTTGCACACATGATGGCAAAGCAATTGCGCATCCCTGTTTGGCAAC
CAGTGATTCGTCAAGCACAGCACGCTCAAAAAGGTTTAAGTCGGCTAGAACGCCTAGAAAATATCGAACAGCAATTTATT
ATCAACCCAACCGAAAAACGCCGTTTCCGTAAAGTCCTCATCATTGATGATGTGGTGACCACGGGGAGTTCAATCCATGC
ATTAAGTGAGCTGTTACATCAGCTACATTGCACGCAGGTATATGCCGCATGCATTGCTGCGGCACAGCCTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(123-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.735

93.333

0.576
  comF Acinetobacter baumannii D1279779

61.224

93.333

0.571