Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MTP09_RS03935 Genome accession   NZ_CP094532
Coordinates   833746..834396 (-) Length   216 a.a.
NCBI ID   WP_243550705.1    Uniprot ID   -
Organism   Chryseobacterium suipulveris strain SC2-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 828746..839396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP09_RS03910 (MTP09_03910) - 829015..829425 (+) 411 WP_243550700.1 thiol-disulfide oxidoreductase DCC family protein -
  MTP09_RS03915 (MTP09_03915) - 829478..830113 (+) 636 WP_243550701.1 DUF4290 domain-containing protein -
  MTP09_RS03920 (MTP09_03920) murA 830113..831420 (+) 1308 WP_243550702.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MTP09_RS03925 (MTP09_03925) der 831639..832946 (+) 1308 WP_243550703.1 ribosome biogenesis GTPase Der -
  MTP09_RS03930 (MTP09_03930) upp 833054..833704 (+) 651 WP_243550704.1 uracil phosphoribosyltransferase -
  MTP09_RS03935 (MTP09_03935) comF 833746..834396 (-) 651 WP_243550705.1 ComF family protein Machinery gene
  MTP09_RS03940 (MTP09_03940) - 834415..835884 (-) 1470 WP_243550706.1 helix-turn-helix domain-containing protein -
  MTP09_RS03945 (MTP09_03945) aceB 836088..837665 (+) 1578 WP_243550707.1 malate synthase A -
  MTP09_RS03950 (MTP09_03950) - 837662..838006 (-) 345 WP_243550708.1 hypothetical protein -
  MTP09_RS03955 (MTP09_03955) aceA 838075..839361 (+) 1287 WP_396022244.1 isocitrate lyase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25381.45 Da        Isoelectric Point: 7.7341

>NTDB_id=670050 MTP09_RS03935 WP_243550705.1 833746..834396(-) (comF) [Chryseobacterium suipulveris strain SC2-2]
MFLNLLFPNRCLECGTMISAEELVCEICFEKIHFTHDDFNDNNLLKERCKLLFPVENAFALMQFDKESLSQKIIHNLKYG
SREKIGKILAEWTSERISFENGKPDLLVPVPLHPRKLRKRGYNQLHLFTETISRDFEIPFDLHLVRRNFYKKAQAKKRRE
ERIQTENIFSINKEVTNKHILLIDDVFTTGNTMASMAWEILKSENNTVSVLVMAMD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=670050 MTP09_RS03935 WP_243550705.1 833746..834396(-) (comF) [Chryseobacterium suipulveris strain SC2-2]
ATGTTTCTGAACCTCCTTTTCCCGAACCGTTGTTTAGAATGCGGAACGATGATTTCCGCGGAAGAACTGGTTTGCGAAAT
ATGTTTTGAAAAAATTCATTTTACCCACGACGATTTTAATGACAACAATCTGCTGAAAGAACGATGCAAACTACTCTTTC
CCGTGGAAAACGCTTTCGCACTAATGCAGTTTGATAAAGAAAGTCTGAGCCAAAAAATCATCCACAACCTGAAATACGGA
AGCCGCGAGAAAATCGGAAAAATTTTGGCAGAATGGACTTCCGAAAGAATTTCCTTTGAAAATGGAAAACCAGACCTGCT
TGTCCCCGTTCCTCTTCATCCAAGAAAACTTAGGAAACGCGGCTACAACCAGCTCCATCTTTTTACTGAGACCATTTCAA
GAGATTTCGAAATTCCATTCGACCTTCATTTGGTACGGCGAAACTTCTACAAAAAAGCACAGGCAAAGAAACGACGGGAG
GAAAGAATTCAGACAGAGAATATTTTTTCCATTAATAAGGAAGTCACAAACAAACATATTCTGCTCATCGACGACGTTTT
TACCACAGGAAACACGATGGCTTCAATGGCGTGGGAAATCCTGAAATCGGAGAATAACACAGTGAGTGTTTTGGTGATGG
CGATGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(84-204)

Double zinc ribbon domain (DZR_2)

(2-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50.926

100

0.509