Detailed information NTG0669924

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MTX44_RS20610
• Genome accession: NZ_CP094512
• Coordinates: 4219375..4220175 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain SHX180
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4214375..4225175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTX44_RS20575 (MTX44_20535)	gspH	4214531..4215046 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
MTX44_RS20580 (MTX44_20540)	gspI	4215043..4215408 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
MTX44_RS20585 (MTX44_20545)	gspJ	4215405..4216001 (+)	597	WP_004183043.1	type II secretion system minor pseudopilin GspJ	-
MTX44_RS20590 (MTX44_20550)	gspK	4215998..4216984 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
MTX44_RS20595 (MTX44_20555)	gspL	4216971..4218164 (+)	1194	WP_019704440.1	type II secretion system protein GspL	-
MTX44_RS20600 (MTX44_20560)	-	4218157..4218642 (+)	486	WP_004183037.1	type II secretion system protein M	-
MTX44_RS20605 (MTX44_20565)	-	4218632..4219378 (+)	747	WP_004145897.1	type II secretion system protein N	-
MTX44_RS20610 (MTX44_20570)	pilD	4219375..4220175 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
MTX44_RS20615 (MTX44_20575)	hrpB	4220223..4222652 (-)	2430	WP_213222747.1	ATP-dependent helicase HrpB	-
MTX44_RS20620 (MTX44_20580)	thpR	4222725..4223261 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
MTX44_RS20625 (MTX44_20585)	sfsA	4223261..4223977 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
MTX44_RS20630 (MTX44_20590)	dksA	4224140..4224595 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=669924 MTX44_RS20610 WP_002888947.1 4219375..4220175(+) (pilD) [Klebsiella pneumoniae strain SHX180]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=669924 MTX44_RS20610 WP_002888947.1 4219375..4220175(+) (pilD) [Klebsiella pneumoniae strain SHX180]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAACTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425