Detailed information NTG0669839

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MST28_RS21220
• Genome accession: NZ_CP094479
• Coordinates: 4303932..4304732 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain LXR-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4298932..4309732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MST28_RS21185 (MST28_21185)	gspH	4299088..4299603 (+)	516	WP_243440230.1	type II secretion system minor pseudopilin GspH	-
MST28_RS21190 (MST28_21190)	gspI	4299600..4299965 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
MST28_RS21195 (MST28_21195)	gspJ	4299962..4300558 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
MST28_RS21200 (MST28_21200)	gspK	4300555..4301541 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
MST28_RS21205 (MST28_21205)	gspL	4301528..4302721 (+)	1194	WP_243440231.1	type II secretion system protein GspL	-
MST28_RS21210 (MST28_21210)	-	4302714..4303199 (+)	486	WP_025368434.1	type II secretion system protein M	-
MST28_RS21215 (MST28_21215)	-	4303189..4303935 (+)	747	WP_023316460.1	type II secretion system protein N	-
MST28_RS21220 (MST28_21220)	pilD	4303932..4304732 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
MST28_RS21225 (MST28_21225)	hrpB	4304780..4307209 (-)	2430	WP_029602503.1	ATP-dependent helicase HrpB	-
MST28_RS21230 (MST28_21230)	thpR	4307282..4307818 (+)	537	WP_101985231.1	RNA 2',3'-cyclic phosphodiesterase	-
MST28_RS21235 (MST28_21235)	sfsA	4307818..4308534 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
MST28_RS21240 (MST28_21240)	dksA	4308697..4309152 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=669839 MST28_RS21220 WP_004145898.1 4303932..4304732(+) (pilD) [Klebsiella pneumoniae strain LXR-1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=669839 MST28_RS21220 WP_004145898.1 4303932..4304732(+) (pilD) [Klebsiella pneumoniae strain LXR-1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425