Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG970_RS27340 Genome accession   NZ_CP109032
Coordinates   6037876..6039285 (-) Length   469 a.a.
NCBI ID   WP_406354426.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00658     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6032876..6044285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG970_RS27315 (OG970_27325) - 6032926..6033594 (-) 669 WP_406354423.1 hypothetical protein -
  OG970_RS27320 (OG970_27330) - 6033657..6034208 (-) 552 WP_266456951.1 SigE family RNA polymerase sigma factor -
  OG970_RS27325 (OG970_27335) - 6034497..6035411 (-) 915 WP_406354424.1 A/G-specific adenine glycosylase -
  OG970_RS27330 (OG970_27340) - 6035759..6036586 (+) 828 WP_266456947.1 hypothetical protein -
  OG970_RS27335 (OG970_27345) disA 6036680..6037804 (-) 1125 WP_266830670.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG970_RS27340 (OG970_27350) radA/sms 6037876..6039285 (-) 1410 WP_406354426.1 DNA repair protein RadA Machinery gene
  OG970_RS27345 (OG970_27355) - 6039493..6041364 (+) 1872 WP_406354428.1 BACON domain-containing protein -
  OG970_RS27350 (OG970_27360) - 6041398..6042237 (-) 840 WP_371598990.1 hypothetical protein -
  OG970_RS27355 (OG970_27365) - 6042309..6043241 (+) 933 WP_266456935.1 Ppx/GppA phosphatase family protein -
  OG970_RS27360 (OG970_27370) - 6043431..6044255 (+) 825 WP_266456932.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49594.74 Da        Isoelectric Point: 8.0022

>NTDB_id=669733 OG970_RS27340 WP_406354426.1 6037876..6039285(-) (radA/sms) [Streptomyces sp. NBC_00658]
MAVRTKSAKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASSEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPPGMKVLEVADMGAALSVLPRSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=669733 OG970_RS27340 WP_406354426.1 6037876..6039285(-) (radA/sms) [Streptomyces sp. NBC_00658]
ATGGCTGTCCGTACGAAATCCGCGAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGTTGCTCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCTGTCCGTACGACGGCACCGGGCC
GGGTCACCACGTCCGCGGTCCCCATCGGGCAGGTCGACGGCCGTCAAGCCACCGCACGCTCCACCGGAGTGCCCGAGCTG
GACCGCGTGCTTGGCGGCGGTCTCGTACCCGGCGCGGTCGTCCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
GCTCCTTGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGTTGTACGTGACCGGGGAGGAGTCGGCCAGCCAGG
TGCGGCTCCGCGCCGACCGCATCAAGGCCATCGACGACCATCTCTATCTCGCCGCCGAGACCGATCTGGCCGCCGTTCTC
GGTCACTTGGACGCGGTGAAACCGTCCCTGCTCATCGTGGACTCCGTACAGACCGTCGCCTCCTCGGAGATCGACGGTGC
GCCGGGCGGCATGGCCCAGGTCCGGGAGGTCGCCGGTGCGCTCATCCGCGCTTCCAAGGAGCGCGGCATGTCCACCCTCC
TCGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTCGAACACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTCGTACGAGGGGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGTTGCTT
CGAGCTGCACGACGAGGGCATCACGGGACTGGCCGACCCTTCGGGCCTGTTCCTGACCCGCCGCGCGGAGGCGGTCCCCG
GCACCTGTCTGACGGTCACTCTGGAGGGCCGCCGCCCCCTGGTCGCCGAAGTGCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCCCCGCGGCGTACGACCTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCCCTGGGAAAGCGGGACATCTACTCGGCAACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCGCTCGCCCTCGCCTCCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCCGGGGAGGTCAGACGGGTCACGGGCGTTCAGCGCCGGCTCGCCGAAGCCCACCGGCTCGGCTTCACCCACGCCCTCGT
CCCGAGCGATCCCGGCAAGATCCCTCCCGGCATGAAGGTCCTGGAAGTCGCCGATATGGGAGCCGCGCTGAGCGTCCTGC
CGAGGTCGCGTCGTCGAGAGGCCCCACGGGAGGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis SK321

43.779

92.537

0.405
  radA Streptococcus mitis NCTC 12261

43.779

92.537

0.405
  radA Streptococcus pneumoniae Rx1

43.897

90.832

0.399
  radA Streptococcus pneumoniae D39

43.897

90.832

0.399
  radA Streptococcus pneumoniae R6

43.897

90.832

0.399
  radA Streptococcus pneumoniae TIGR4

43.897

90.832

0.399