Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MRY16_RS01800 Genome accession   NZ_CP094445
Coordinates   385346..386005 (-) Length   219 a.a.
NCBI ID   WP_243483947.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380346..391005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS01765 (MRY16_01765) - 380456..381130 (+) 675 WP_004909422.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MRY16_RS01770 (MRY16_01770) - 381150..381782 (+) 633 WP_004909421.1 ABC transporter substrate-binding protein -
  MRY16_RS01775 (MRY16_01775) - 381794..382081 (+) 288 WP_004964385.1 STAS domain-containing protein -
  MRY16_RS01780 (MRY16_01780) - 382404..382853 (+) 450 WP_099948033.1 hypothetical protein -
  MRY16_RS01785 (MRY16_01785) - 383212..384225 (-) 1014 WP_004909415.1 magnesium and cobalt transport protein CorA -
  MRY16_RS01790 (MRY16_01790) - 384376..384960 (+) 585 WP_243483945.1 TIGR00730 family Rossman fold protein -
  MRY16_RS01795 (MRY16_01795) - 384970..385356 (+) 387 WP_004909413.1 NUDIX domain-containing protein -
  MRY16_RS01800 (MRY16_01800) comF 385346..386005 (-) 660 WP_243483947.1 phosphoribosyltransferase family protein Machinery gene
  MRY16_RS01805 (MRY16_01805) recG 385998..388043 (-) 2046 WP_243483949.1 ATP-dependent DNA helicase RecG -
  MRY16_RS01810 (MRY16_01810) - 388063..388881 (+) 819 WP_243483951.1 SDR family NAD(P)-dependent oxidoreductase -
  MRY16_RS01815 (MRY16_01815) - 389006..389986 (+) 981 WP_099948039.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25065.28 Da        Isoelectric Point: 8.5924

>NTDB_id=669531 MRY16_RS01800 WP_243483947.1 385346..386005(-) (comF) [Acinetobacter junii strain A2-1]
MFKLLSRGAQQVADYFTACHLCDIGVRAQYGVCQSCWQQLPWLKHKIERHQQDILIACHYEYPISELIQQFKYEQQLHHL
RLLSGLLLELKLPKVHTIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSQVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=669531 MRY16_RS01800 WP_243483947.1 385346..386005(-) (comF) [Acinetobacter junii strain A2-1]
ATGTTTAAATTATTGAGTCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACAATATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTATTGCCTGTCATTATGAATATCCGATCAGCGAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAACTGCCAAAAGTACATACCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGGGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCTCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGACTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCAAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

63.636

95.434

0.607
  comF Acinetobacter baumannii D1279779

63.158

95.434

0.603

Multiple sequence alignment