Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   MQC90_RS20215 Genome accession   NZ_CP094361
Coordinates   3842027..3842146 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain NCIB 3610     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3837027..3847146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS20195 albG 3837191..3837892 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  MQC90_RS20200 ywhL 3837898..3839274 (-) 1377 WP_003244415.1 YncE family protein -
  MQC90_RS20205 ywhK 3839313..3840668 (-) 1356 WP_003227552.1 YncE family protein -
  MQC90_RS22665 - 3840665..3840895 (-) 231 WP_009968328.1 hypothetical protein -
  MQC90_RS20210 rapF 3840898..3842043 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  MQC90_RS20215 phrF 3842027..3842146 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  MQC90_RS20220 ywhH 3842245..3842718 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  MQC90_RS20225 speB 3842750..3843622 (-) 873 WP_003227545.1 agmatinase -
  MQC90_RS20230 speE 3843683..3844513 (-) 831 WP_003227543.1 spermidine synthase -
  MQC90_RS20235 pbpG 3844715..3846790 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=669320 MQC90_RS20215 WP_009968329.1 3842027..3842146(+) (phrF) [Bacillus subtilis strain NCIB 3610]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=669320 MQC90_RS20215 WP_009968329.1 3842027..3842146(+) (phrF) [Bacillus subtilis strain NCIB 3610]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment