Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MQC90_RS19160 Genome accession   NZ_CP094361
Coordinates   3639476..3640165 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain NCIB 3610     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3634476..3645165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS19125 flgN 3634656..3635138 (-) 483 WP_003227999.1 flagellar protein FlgN -
  MQC90_RS19130 flgM 3635154..3635420 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  MQC90_RS19135 yvyF 3635501..3635920 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MQC90_RS19140 comFC 3635994..3636716 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  MQC90_RS19145 comFB 3636680..3636976 (-) 297 WP_003227989.1 late competence protein ComFB -
  MQC90_RS19150 comFA 3637036..3638427 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  MQC90_RS19155 fakBA 3638533..3639378 (-) 846 WP_003244125.1 DegV family protein -
  MQC90_RS19160 degU 3639476..3640165 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MQC90_RS19165 degS 3640248..3641405 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MQC90_RS19170 yvyE 3641622..3642275 (+) 654 WP_003227979.1 YigZ family protein -
  MQC90_RS19175 tagV 3642275..3643450 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MQC90_RS19180 tagO 3643523..3644599 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=669314 MQC90_RS19160 WP_003219701.1 3639476..3640165(-) (degU) [Bacillus subtilis strain NCIB 3610]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=669314 MQC90_RS19160 WP_003219701.1 3639476..3640165(-) (degU) [Bacillus subtilis strain NCIB 3610]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment