Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MQC90_RS19140 Genome accession   NZ_CP094361
Coordinates   3635994..3636716 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain NCIB 3610     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3630994..3641716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS19105 fliW 3631133..3631564 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  MQC90_RS19110 yviE 3631585..3632160 (-) 576 WP_003243053.1 DUF6470 family protein -
  MQC90_RS19115 flgL 3632207..3633103 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  MQC90_RS19120 flgK 3633114..3634637 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MQC90_RS19125 flgN 3634656..3635138 (-) 483 WP_003227999.1 flagellar protein FlgN -
  MQC90_RS19130 flgM 3635154..3635420 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  MQC90_RS19135 yvyF 3635501..3635920 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MQC90_RS19140 comFC 3635994..3636716 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  MQC90_RS19145 comFB 3636680..3636976 (-) 297 WP_003227989.1 late competence protein ComFB -
  MQC90_RS19150 comFA 3637036..3638427 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  MQC90_RS19155 fakBA 3638533..3639378 (-) 846 WP_003244125.1 DegV family protein -
  MQC90_RS19160 degU 3639476..3640165 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MQC90_RS19165 degS 3640248..3641405 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=669312 MQC90_RS19140 WP_003227991.1 3635994..3636716(-) (comFC) [Bacillus subtilis strain NCIB 3610]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=669312 MQC90_RS19140 WP_003227991.1 3635994..3636716(-) (comFC) [Bacillus subtilis strain NCIB 3610]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment