Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG392_RS12190 Genome accession   NZ_CP109007
Coordinates   2693508..2694518 (-) Length   336 a.a.
NCBI ID   WP_329278503.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00691     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2688508..2699518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG392_RS12180 (OG392_12195) rcrQ 2690122..2692053 (+) 1932 WP_329278499.1 ABC transporter ATP-binding protein Regulator
  OG392_RS12185 (OG392_12200) - 2692087..2693520 (+) 1434 WP_329278501.1 TerD family protein -
  OG392_RS12190 (OG392_12205) rpoS 2693508..2694518 (-) 1011 WP_329278503.1 RNA polymerase sigma factor Regulator
  OG392_RS12195 (OG392_12210) dnaG 2694666..2696561 (-) 1896 WP_329278504.1 DNA primase -
  OG392_RS12200 (OG392_12215) - 2696591..2697850 (-) 1260 WP_329278506.1 FAD-dependent oxidoreductase -
  OG392_RS12205 (OG392_12220) - 2697994..2699376 (-) 1383 WP_329278508.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37921.17 Da        Isoelectric Point: 5.5926

>NTDB_id=668997 OG392_RS12190 WP_329278503.1 2693508..2694518(-) (rpoS) [Streptomyces sp. NBC_00691]
MQTRIVSQEPPAAAPDEQPETPPQRRRPDPGGNGPSSDLFRQYLREIGRIPLLTAEDEVDLARRVEAGLFAEEKLANTPD
LDSRLASDLDQLVVLGRIAKRKLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIR
QAMSRALADQARTIRVPVHVVELINRVIRVQRRMLQERGYEPTAEEVAAQLDVAPERVGEVLRLAQEPVSLHAPVGEEDD
VALGDLIEDGDAASPVESAAFLLLRRHLEDVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLN
KLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=668997 OG392_RS12190 WP_329278503.1 2693508..2694518(-) (rpoS) [Streptomyces sp. NBC_00691]
GTGCAGACCCGGATCGTGTCCCAGGAACCGCCCGCCGCCGCACCGGACGAGCAGCCGGAGACACCACCCCAGCGCCGCCG
CCCCGACCCGGGCGGCAACGGGCCCTCCTCCGACCTCTTCCGCCAGTACCTCCGCGAGATCGGCCGCATCCCGCTGCTCA
CCGCCGAGGACGAGGTCGACCTCGCCCGCCGCGTCGAGGCGGGACTGTTCGCCGAGGAGAAACTCGCCAACACCCCCGAC
CTGGACTCCCGGTTGGCGAGCGACCTGGACCAGCTCGTCGTCCTCGGCAGGATCGCCAAACGCAAGCTCATCGAGGCCAA
CCTCCGCCTCGTCGTCTCCGTCGCCAAACGGTACGTGGGCCGCGGCCTGACCATGCTGGACCTCGTCCAGGAGGGCAACC
TCGGCCTCATCAGGGCCGTCGAGAAGTTCGACTACGCGCGCGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCGC
CAGGCGATGTCCCGGGCCCTCGCCGACCAGGCCCGGACCATCCGCGTCCCCGTGCACGTCGTCGAACTCATCAACCGCGT
CATCCGCGTCCAGCGCCGCATGCTCCAGGAACGCGGCTACGAACCCACCGCCGAGGAGGTCGCCGCCCAGCTGGACGTGG
CCCCCGAGCGGGTCGGCGAGGTGCTCCGCCTCGCCCAGGAACCCGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGAC
GTCGCCCTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCCGCCGCCTTCCTGCTGCTCCGCCGCCA
CCTGGAGGACGTGCTCTCCACCCTCGGCGAGCGCGAACGGAAGGTCGTCCAGCTCCGCTACGGCCTCGACGACGGCAGGC
CCCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTGACCCGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCAAC
AAACTGAGGGACCACGCGTACGCGGACCAGCTGCGGGGCTATCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(38-71)

Sigma-70, region 4 (Sigma70_r4)

(271-323)

Sigma-70 region 3 (Sigma70_r3)

(182-258)

Sigma-70 region 2 (Sigma70_r2)

(103-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.953

88.69

0.381