Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG392_RS12180 Genome accession   NZ_CP109007
Coordinates   2690122..2692053 (+) Length   643 a.a.
NCBI ID   WP_329278499.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00691     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2685122..2697053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG392_RS12165 (OG392_12180) - 2686477..2686788 (+) 312 WP_329278494.1 YtxH domain-containing protein -
  OG392_RS12170 (OG392_12185) - 2686819..2688258 (+) 1440 WP_329278496.1 FGGY family carbohydrate kinase -
  OG392_RS12175 (OG392_12190) rcrP 2688389..2690122 (+) 1734 WP_329278498.1 ABC transporter ATP-binding protein Regulator
  OG392_RS12180 (OG392_12195) rcrQ 2690122..2692053 (+) 1932 WP_329278499.1 ABC transporter ATP-binding protein Regulator
  OG392_RS12185 (OG392_12200) - 2692087..2693520 (+) 1434 WP_329278501.1 TerD family protein -
  OG392_RS12190 (OG392_12205) rpoS 2693508..2694518 (-) 1011 WP_329278503.1 RNA polymerase sigma factor Regulator
  OG392_RS12195 (OG392_12210) dnaG 2694666..2696561 (-) 1896 WP_329278504.1 DNA primase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 68965.30 Da        Isoelectric Point: 5.4403

>NTDB_id=668996 OG392_RS12180 WP_329278499.1 2690122..2692053(+) (rcrQ) [Streptomyces sp. NBC_00691]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLLKQLAPERGTLWVMLIAGVLSVAASVVGPKILGKATDLVFAGVVGRQIEGGT
KAEAIERLRASGDSGMADMLSGVDFTPGQGIDFSAVGEVLLVVLGVYVAAGLLMLVSTRMSIKVINRTVYRMREDVQTKL
ARLPLSYFDKAKRGEVLSRATNDIDNISQTLQQSMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAAKIGKR
SQPHFVQQWKSTGTLNAHVEEMYSGHTLVKVFGRQAESAEDFREQNEALYEAGFKAQFNSGVMQPVMFFISNINYVLVAV
VGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEPDAPRSESETPADLKGKVAL
EGVSFRYEADKPLIENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGADIAKMPRERLRAGIGMVLQD
TWLFGGTIADNIAYGATRAVTRAEIEEAARAAHADRFVRTLPEGYDTVIDDDGAGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEQLLSSGGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=668996 OG392_RS12180 WP_329278499.1 2690122..2692053(+) (rcrQ) [Streptomyces sp. NBC_00691]
ATGGCCGGTCCTGGCGGACGCATGATGGCCGGTGGCGGCCCCGACCAGCGGTCGATGGACTTCAAGGGCTCGGGCAAGCG
GCTGCTCAAGCAGCTGGCGCCCGAGCGCGGCACGCTCTGGGTGATGCTGATCGCCGGTGTGCTGTCGGTGGCGGCCTCGG
TGGTCGGCCCGAAGATCCTCGGCAAGGCGACCGACCTCGTCTTCGCGGGTGTCGTCGGGCGGCAGATCGAGGGCGGCACG
AAGGCGGAGGCGATCGAGAGGCTGCGCGCCTCGGGCGACTCCGGCATGGCGGACATGCTGAGCGGTGTCGACTTCACGCC
GGGGCAGGGGATCGACTTCTCCGCCGTCGGCGAGGTGCTCCTCGTCGTCCTCGGTGTGTACGTGGCGGCGGGCCTGCTGA
TGCTGGTCTCCACCCGGATGTCGATCAAGGTGATCAACCGGACGGTCTACCGGATGCGGGAGGACGTCCAGACGAAGCTG
GCGCGGCTTCCCCTGTCGTACTTCGACAAGGCCAAGCGCGGCGAGGTGCTGTCGCGGGCGACCAACGACATCGACAACAT
CTCGCAGACCCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCGTCGGCGTGCTCGCGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTCGTGGCGCTGGTCACGGTGCCGGTCTCGGTCTTCGTCGCGGCGAAGATCGGCAAGCGC
TCGCAGCCGCACTTCGTTCAGCAGTGGAAGTCCACGGGCACGCTCAACGCGCACGTGGAGGAGATGTACAGCGGGCACAC
CCTGGTGAAGGTCTTCGGCCGGCAGGCGGAGTCCGCGGAGGACTTCCGCGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTCCTGGTGGCCGTG
GTCGGCGGTCTGCGGGTGGCGAGCGGCACGCTCTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCGGCCGAGCGGATCTTCGAGCTGC
TCGACGCGGAGGAGCAGGAGCCGGACGCGCCGAGGAGCGAGAGCGAGACGCCCGCGGACCTCAAGGGCAAGGTGGCCCTG
GAGGGGGTCTCCTTCCGCTACGAGGCCGACAAGCCGCTCATCGAGAACCTGTCGCTCACGGTGGAGCCGGGCCAGACGGT
CGCGATCGTCGGCCCGACCGGCGCGGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGAGGTGACGGGCGGCC
GGATCACCCTCGACGGGGCCGACATCGCCAAGATGCCCCGGGAGCGGCTGCGGGCCGGGATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGCACCATCGCGGACAACATCGCGTACGGCGCCACGCGCGCGGTGACCCGGGCGGAGATCGAGGA
GGCGGCGCGGGCCGCGCACGCCGACCGCTTCGTCCGCACCCTGCCCGAGGGGTACGACACGGTCATCGACGACGACGGGG
CGGGGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTCGAC
GAGGCCACCAGCTCGGTCGACACCCGGACCGAGGTCCTCATCCAGAAGGCGATGGCCCGACTGGCCCACGGACGCACGTC
GTTCGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGTTCCATCGTCGAAC
AGGGCACGCACGAACAGCTGTTGTCGTCGGGCGGGGCCTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCC
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(40-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.418

96.267

0.379