Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG392_RS12175 Genome accession   NZ_CP109007
Coordinates   2688389..2690122 (+) Length   577 a.a.
NCBI ID   WP_329278498.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00691     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2683389..2695122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG392_RS12145 (OG392_12160) - 2684307..2685731 (+) 1425 WP_329278492.1 DUF2252 domain-containing protein -
  OG392_RS12165 (OG392_12180) - 2686477..2686788 (+) 312 WP_329278494.1 YtxH domain-containing protein -
  OG392_RS12170 (OG392_12185) - 2686819..2688258 (+) 1440 WP_329278496.1 FGGY family carbohydrate kinase -
  OG392_RS12175 (OG392_12190) rcrP 2688389..2690122 (+) 1734 WP_329278498.1 ABC transporter ATP-binding protein Regulator
  OG392_RS12180 (OG392_12195) rcrQ 2690122..2692053 (+) 1932 WP_329278499.1 ABC transporter ATP-binding protein Regulator
  OG392_RS12185 (OG392_12200) - 2692087..2693520 (+) 1434 WP_329278501.1 TerD family protein -
  OG392_RS12190 (OG392_12205) rpoS 2693508..2694518 (-) 1011 WP_329278503.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62736.84 Da        Isoelectric Point: 5.4021

>NTDB_id=668995 OG392_RS12175 WP_329278498.1 2688389..2690122(+) (rcrP) [Streptomyces sp. NBC_00691]
MLIRLLRTHLGPYRKPIALLVLLQFLQTCASLYLPTLNADIIDNGVVDGDTGYILRFGALMVGVSVVQVVCNIGAVFYGA
RTASALGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQIQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLAVSVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVKDDYEEERFRGANAELTDVSMATGRLMAL
MFPVVMTVVNISSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLATESSVVP
PVKPVTELDRRGHLEVKGADFRYPGAEESVLKEVGLEARPGETTAIIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVR
KLHPDLMARTVGLVPQKPYLFSGTVATNLRYGKPDASDEELWHALEVAQAADFVRNLEAGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYETDALLRAALARETADSTVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHQELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=668995 OG392_RS12175 WP_329278498.1 2688389..2690122(+) (rcrP) [Streptomyces sp. NBC_00691]
GTGCTCATAAGACTTCTCCGAACCCACCTCGGGCCCTATCGAAAACCCATCGCACTGCTCGTGCTGCTGCAGTTCCTGCA
GACCTGCGCGAGCCTCTACCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTCGTCGACGGGGACACCGGATACA
TCCTGCGCTTCGGCGCCCTGATGGTCGGCGTCTCCGTCGTCCAGGTCGTCTGCAACATCGGGGCCGTGTTCTACGGCGCC
CGCACCGCGTCCGCGCTGGGCCGGGACGTGCGTGCCGCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGGGAGCTGGG
GCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAACGACGTGCAGCAGATCCAGATGCTGGTCCTGATGGCGTTCA
CGCTGATGGTCTCCGCGCCCATCATGTGCGTCGGCGGCATCGTGATGGCCCTCGGCCAGGACGTGCCGCTCTCGGGCGTG
CTGCTCGCCGTGGTGCCGGTCCTCGCGGTCTCGGTCTCCCTGATCGTGCGGAGGATGCGGCCGCTCTTCCGGACGATGCA
GGAGCGTCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCCGGGCGTTCGTGAAGGACG
ACTACGAGGAGGAGCGGTTCCGCGGCGCCAACGCGGAGCTGACCGATGTCTCGATGGCGACCGGCCGGCTGATGGCCCTG
ATGTTCCCGGTGGTCATGACCGTCGTGAACATCTCCAGCGTGGCGGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCGGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCCCGGGCCGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGCGACCGAGTCCAGCGTGGTCCCG
CCGGTGAAGCCGGTGACCGAGCTGGACCGGCGGGGGCATCTGGAGGTCAAGGGCGCCGACTTCCGCTACCCGGGCGCGGA
GGAGTCCGTCCTCAAGGAGGTCGGGCTCGAAGCCCGGCCCGGTGAGACGACCGCGATCATCGGCTCCACCGGCAGCGGCA
AGTCGACCCTGCTCGGACTCGTGCCGCGGCTCTTCGACGCCACCGGCGGCGAGGTCCTCGTCGACGGCGTCGACGTCCGG
AAGCTACACCCCGATCTCATGGCGAGGACCGTGGGACTCGTCCCCCAGAAGCCCTACCTCTTCTCCGGGACCGTCGCCAC
CAACCTCCGCTACGGCAAGCCCGACGCGAGCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCCCAGGCCGCCGACTTCG
TACGGAACCTCGAAGCCGGTCTGAACGCGCCCATCGCACAGGGCGGCACCAACGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGAGACGGA
CGCCCTGCTGCGGGCCGCGCTCGCCCGGGAGACGGCCGACTCGACCGTCGTGATCGTCGCCCAGCGGGTCTCCACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGGCACCAGGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.569

97.4

0.395