Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LBAT_RS00040 | Genome accession | NZ_AP014808 |
| Coordinates | 9293..9835 (+) | Length | 180 a.a. |
| NCBI ID | WP_056969905.1 | Uniprot ID | A0A0D6A0Q8 |
| Organism | Lactobacillus acetotolerans strain NBRC 13120 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4293..14835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LBAT_RS00030 (LBAT_0006) | gyrA | 6231..8744 (+) | 2514 | WP_060458992.1 | DNA gyrase subunit A | - |
| LBAT_RS00035 (LBAT_0007) | rpsF | 8952..9248 (+) | 297 | WP_060458993.1 | 30S ribosomal protein S6 | - |
| LBAT_RS00040 (LBAT_0008) | ssb | 9293..9835 (+) | 543 | WP_056969905.1 | single-stranded DNA-binding protein | Machinery gene |
| LBAT_RS00045 (LBAT_0009) | rpsR | 9860..10099 (+) | 240 | WP_054681409.1 | 30S ribosomal protein S18 | - |
| LBAT_RS00050 (LBAT_0010) | - | 10268..12289 (+) | 2022 | WP_060458994.1 | DHH family phosphoesterase | - |
| LBAT_RS00055 (LBAT_0011) | rplI | 12301..12756 (+) | 456 | WP_060458995.1 | 50S ribosomal protein L9 | - |
| LBAT_RS00060 (LBAT_0012) | dnaB | 12802..14184 (+) | 1383 | WP_060458996.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19476.13 Da Isoelectric Point: 4.9713
>NTDB_id=66897 LBAT_RS00040 WP_056969905.1 9293..9835(+) (ssb) [Lactobacillus acetotolerans strain NBRC 13120]
MINRAVLVGRLTRDPELRTTTSGISVASFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKTREAQSQNGGFTPNNNGNVGTGNAPSTPSSNNSQSNGNTSNNNDNNDSKKDKP
KDPFAGSGDTIDISDDDLPF
MINRAVLVGRLTRDPELRTTTSGISVASFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKTREAQSQNGGFTPNNNGNVGTGNAPSTPSSNNSQSNGNTSNNNDNNDSKKDKP
KDPFAGSGDTIDISDDDLPF
Nucleotide
Download Length: 543 bp
>NTDB_id=66897 LBAT_RS00040 WP_056969905.1 9293..9835(+) (ssb) [Lactobacillus acetotolerans strain NBRC 13120]
ATGATTAATAGAGCTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTACGAGTGGAATCTCAGTTGC
TAGCTTTACGCTTGCCGTTGACCGTCAGTATACTAACGCTCAAGGTGAAAGAGGCGCAGACTTTATCAGCTGTGTGATCT
GGAGAAAGGCTGCGGAGAACTTCTGTAACTTTACTTCAAAGGGATCATTAGTTGGTATTGATGGCCGAATTCAAACTAGA
AGTTATGATAACAAAGATGGGCAGCGAGTTTATGTAACTGAAGTTGTAGTAGACAATTTCGCGTTACTTGAATCACGTAA
AACTCGTGAGGCTCAAAGCCAGAATGGCGGTTTCACTCCAAATAACAATGGGAATGTTGGTACTGGGAATGCACCTAGCA
CGCCAAGTAGCAATAATTCTCAAAGTAATGGAAATACATCAAATAATAATGACAACAATGATAGTAAAAAAGATAAACCT
AAAGATCCATTTGCTGGATCGGGCGATACCATTGACATTTCAGATGATGATCTTCCATTCTAA
ATGATTAATAGAGCTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTACGAGTGGAATCTCAGTTGC
TAGCTTTACGCTTGCCGTTGACCGTCAGTATACTAACGCTCAAGGTGAAAGAGGCGCAGACTTTATCAGCTGTGTGATCT
GGAGAAAGGCTGCGGAGAACTTCTGTAACTTTACTTCAAAGGGATCATTAGTTGGTATTGATGGCCGAATTCAAACTAGA
AGTTATGATAACAAAGATGGGCAGCGAGTTTATGTAACTGAAGTTGTAGTAGACAATTTCGCGTTACTTGAATCACGTAA
AACTCGTGAGGCTCAAAGCCAGAATGGCGGTTTCACTCCAAATAACAATGGGAATGTTGGTACTGGGAATGCACCTAGCA
CGCCAAGTAGCAATAATTCTCAAAGTAATGGAAATACATCAAATAATAATGACAACAATGATAGTAAAAAAGATAAACCT
AAAGATCCATTTGCTGGATCGGGCGATACCATTGACATTTCAGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.773 |
100 |
0.611 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.543 |
100 |
0.517 |