Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG506_RS26825 Genome accession   NZ_CP109004
Coordinates   6149057..6150466 (-) Length   469 a.a.
NCBI ID   WP_266769766.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00696     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6144057..6155466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG506_RS26800 (OG506_26820) - 6144083..6144676 (-) 594 WP_329557648.1 hypothetical protein -
  OG506_RS26805 (OG506_26825) - 6144784..6145323 (-) 540 WP_019064956.1 SigE family RNA polymerase sigma factor -
  OG506_RS26810 (OG506_26830) - 6145624..6146577 (-) 954 WP_329554365.1 A/G-specific adenine glycosylase -
  OG506_RS26815 (OG506_26835) - 6146958..6147785 (+) 828 WP_329554366.1 hypothetical protein -
  OG506_RS26820 (OG506_26840) disA 6147861..6148919 (-) 1059 WP_266776516.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG506_RS26825 (OG506_26845) radA/sms 6149057..6150466 (-) 1410 WP_266769766.1 DNA repair protein RadA Machinery gene
  OG506_RS26830 (OG506_26850) - 6150665..6152362 (+) 1698 WP_329554367.1 hypothetical protein -
  OG506_RS26835 (OG506_26855) - 6152366..6153223 (-) 858 WP_329554368.1 hypothetical protein -
  OG506_RS26840 (OG506_26860) - 6153307..6154239 (+) 933 WP_329554369.1 Ppx/GppA phosphatase family protein -
  OG506_RS26845 (OG506_26865) - 6154595..6155419 (+) 825 WP_266769759.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49694.80 Da        Isoelectric Point: 8.0018

>NTDB_id=668924 OG506_RS26825 WP_266769766.1 6149057..6150466(-) (radA/sms) [Streptomyces sp. NBC_00696]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVIEVADIGDALRVLPRSRKREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=668924 OG506_RS26825 WP_266769766.1 6149057..6150466(-) (radA/sms) [Streptomyces sp. NBC_00696]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACAGCCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACCGCCCCCGGCC
GCGTCACCACCTCCGCGGTCCCGATCGGCCAGGTCGACGGCCGTACGGCCACCGCCCGTTCGACCGGCGTGCCCGAGCTG
GACCGGGTCCTCGGCGGCGGCCTGGTCCCCGGAGCGGTCGTCCTCGTCGCGGGCGAACCGGGCGTGGGCAAGTCGACCCT
CCTCCTGGACGTGGCGGCGAAGTCGGCGAGCGAGGAGCACCGCACGCTCTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTATCTCGCCGCCGAGACCGATCTGGCCACGATCCTG
GGCCACTTGGACGCGGTGAAGCCCTCCCTCCTCATCCTGGACTCCGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
ACCCGGAGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TGGTGGGCCACGTCACCAAGGACGGCGCGATCGCCGGCCCCCGGCTCCTGGAGCACCTGGTGGACGTGGTGCTCTCCTTC
GAGGGCGACCGCCACGCCCGCCTGCGTCTCGTACGGGGCGTCAAGAACCGCTACGGCACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTGGCCGACCCCAGCGGCCTGTTCCTGACCCGCCGCGCGGAGCCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCCCAGATC
CCCTCCCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCAG
GATCAGCGCCCTGGGCAAGCGGGACATCTACTCGGCGACGGTGGGCGGGGTGAAGCTCTCCGAGCCGGCCGCGGATCTGG
CCATCGCGCTCGCCCTGGCCTCCGCGGCGAGTGACACCCCCCTCCCCAAGAACCTGGTGGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCTCCGAAGCACACCGTCTGGGCTTCACCCACGCCCTCGT
CCCGAGCGACCCGGGCAAGATCCCGGCGGGCATGAAGGTCATCGAAGTGGCCGACATAGGAGACGCTCTCCGGGTCCTCC
CGCGCTCCCGTAAACGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis SK321

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

42.699

96.375

0.412
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409

Multiple sequence alignment