Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OID55_RS22270 Genome accession   NZ_CP108990
Coordinates   5123925..5125334 (-) Length   469 a.a.
NCBI ID   WP_081218648.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00715     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5118925..5130334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OID55_RS22245 (OID55_22225) - 5119235..5119831 (-) 597 WP_356004489.1 hypothetical protein -
  OID55_RS22250 (OID55_22230) - 5119873..5120424 (-) 552 WP_164372953.1 SigE family RNA polymerase sigma factor -
  OID55_RS22255 (OID55_22235) - 5120686..5121603 (-) 918 WP_164372954.1 A/G-specific adenine glycosylase -
  OID55_RS22260 (OID55_22240) - 5121795..5122628 (+) 834 WP_406360983.1 hypothetical protein -
  OID55_RS22265 (OID55_22245) disA 5122732..5123856 (-) 1125 WP_404116906.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OID55_RS22270 (OID55_22250) radA/sms 5123925..5125334 (-) 1410 WP_081218648.1 DNA repair protein RadA Machinery gene
  OID55_RS22275 (OID55_22255) - 5125646..5127493 (+) 1848 WP_406360984.1 BACON domain-containing protein -
  OID55_RS22280 (OID55_22260) - 5127545..5128384 (-) 840 WP_406360985.1 hypothetical protein -
  OID55_RS22285 (OID55_22265) - 5128510..5129442 (+) 933 WP_164372959.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49716.86 Da        Isoelectric Point: 8.2557

>NTDB_id=668765 OID55_RS22270 WP_081218648.1 5123925..5125334(-) (radA/sms) [Streptomyces sp. NBC_00715]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEAVPGTCLTVTLEGRRPLVVEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALGLASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVQEVADIGEALSVLPRSRRREAPREEERRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=668765 OID55_RS22270 WP_081218648.1 5123925..5125334(-) (radA/sms) [Streptomyces sp. NBC_00715]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCACGCCCGCCGTCCGGACGACGGCACCGGGCC
GGGTGACCACCTCAGCGGTCCCGATCGGACAGGTCGACGGCCGTCAGGCCACCGCCCGCAGCACCGGCGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGACTCGTGCCCGGCGCGGTCGTCCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
CCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACCCTGTATGTGACGGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTATCTCGCCGCCGAGACCGATCTGGCCGCCGTGCTC
GGCCACTTGGACGCCGTGAAGCCGTCCCTGCTGATCCTGGACTCCGTGCAGACCATCGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGCGCGTCCAAGGAGCGGGGCATGTCCACCCTGC
TCGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTCGTCCTGTCCTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTCGTGCGCGGCGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTGACCGACCCCTCGGGGCTCTTCCTCACGCGCCGCGCCGAGGCCGTGCCCG
GCACCTGTCTGACCGTCACCCTGGAAGGCCGCCGTCCCCTGGTCGTCGAGGTGCAGGCGCTCACCGTGGACTCGCAGATC
CCCTCCCCGCGGCGCACGACGTCCGGCCTGGAGACCTCCCGTGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGGAAGCGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CCATCGCGCTGGGCCTGGCGTCCGCGGCGAGCGACACCCCGCTGCCCAAGAACCTCGTGGCGATCGGTGAGGTGGGACTC
GCGGGCGAGGTGAGACGCGTCACGGGCGTGCAGCGCAGGCTGGCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTCGT
CCCGGCCGACCCCGGCAAGGTCCCGGCCGGTATGAAGGTCCAGGAAGTGGCGGACATCGGAGAGGCGCTGAGCGTCCTTC
CGCGCTCGCGTCGCAGAGAGGCCCCACGGGAAGAGGAGCGGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus mitis SK321

44.131

90.832

0.401
  radA Streptococcus mitis NCTC 12261

44.131

90.832

0.401