Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG713_RS11545 Genome accession   NZ_CP108987
Coordinates   2706361..2707140 (+) Length   259 a.a.
NCBI ID   WP_028806029.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00723     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2701361..2712140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG713_RS11530 (OG713_11550) - 2701477..2702010 (+) 534 WP_054243672.1 TerD family protein -
  OG713_RS11535 (OG713_11555) - 2702141..2705041 (-) 2901 WP_054243673.1 vitamin B12-dependent ribonucleotide reductase -
  OG713_RS11540 (OG713_11560) nrdR 2705208..2705777 (-) 570 WP_054243788.1 transcriptional regulator NrdR -
  OG713_RS11545 (OG713_11565) dinR/lexA 2706361..2707140 (+) 780 WP_028806029.1 transcriptional repressor LexA Regulator
  OG713_RS11550 (OG713_11570) - 2707299..2709275 (-) 1977 WP_054243674.1 ATP-dependent DNA helicase -
  OG713_RS11555 (OG713_11575) - 2709448..2710119 (-) 672 WP_405965817.1 GNAT family N-acetyltransferase -
  OG713_RS11560 (OG713_11580) - 2710148..2712088 (-) 1941 WP_405963128.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28051.80 Da        Isoelectric Point: 7.0666

>NTDB_id=668655 OG713_RS11545 WP_028806029.1 2706361..2707140(+) (dinR/lexA) [Streptomyces sp. NBC_00723]
MTTTADSATITAQDRSQGRLEPVHAMNEAMNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQASSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=668655 OG713_RS11545 WP_028806029.1 2706361..2707140(+) (dinR/lexA) [Streptomyces sp. NBC_00723]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAATCCCGAGGGACACAAGCGCTCTCTGCCTGGGCGACCTCCAGGCATCCGCGCCGACAGCTCGGGACTCA
CCGACCGGCAGCGCCGAGTGATCGAGGTCATCAGGGACTCCGTACAGCGGCGCGGCTACCCGCCGTCCATGCGGGAGATC
GGTCAGGCGGTCGGCCTGTCCAGCACGTCCTCGGTCGCCCACCAGCTGATGGCACTGGAGCGGAAGGGCTTCCTGCGCCG
CGATCCGCACCGGCCGCGCGCCTACGAGGTGCGAGGTTCCGACCAGGCCAGCTCCGTGCAGCCCACGGACACCGCCGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTCGGACGCATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCCCTCCCGCGGCAGTTGGTGGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTGGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTGGCGGCGATGCTGG
ACGGCGAGGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTGTGGCTCCTCCCGCACAACGCCGCCTACGAGCCG
ATCCCGGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTACTCCGCCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375

Multiple sequence alignment