Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MQE09_RS24280 Genome accession   NZ_CP094280
Coordinates   5086295..5087815 (+) Length   506 a.a.
NCBI ID   WP_049056422.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain NY1464     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5081295..5092815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQE09_RS24260 (MQE09_24260) - 5082852..5083781 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  MQE09_RS24265 (MQE09_24265) ilvM 5083801..5084058 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  MQE09_RS24270 (MQE09_24270) ilvG 5084055..5085701 (-) 1647 WP_015368898.1 acetolactate synthase 2 catalytic subunit -
  MQE09_RS24275 (MQE09_24275) ilvL 5085842..5085940 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MQE09_RS24280 (MQE09_24280) comM 5086295..5087815 (+) 1521 WP_049056422.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MQE09_RS24285 (MQE09_24285) - 5087839..5088177 (-) 339 WP_045362345.1 DUF413 domain-containing protein -
  MQE09_RS24290 (MQE09_24290) hdfR 5088296..5089117 (+) 822 WP_045378651.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54879.10 Da        Isoelectric Point: 7.3770

>NTDB_id=668569 MQE09_RS24280 WP_049056422.1 5086295..5087815(+) (comM) [Klebsiella aerogenes strain NY1464]
MSLAIVYTRAALGVSAPLITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYSFPAKKITINLAPADLPKEGGR
YDLPIALALLVASQQLAAPKLNQYEFIGELALTGALRGVPGAISSAMEAIKAGRQIVVAGDNAEEVGLIGGNECLTAGHL
QEVCAFLEGKHTLQPPAGEITAGDEDYDDLGDVIGQQQGKRALEIVAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNAHYVTRQWRRRPFRAPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKIHLSRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRATPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSRGGVGE
ERSATIRLRVLAARDRQLARQNKLNAQLDSGEIKVWCKLKEDDAIWLEQTLSLLGLSIRAWQRLLKVARTIADLNEDRDI
ERHHLQEALSYRAIDRMLNHLQTLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=668569 MQE09_RS24280 WP_049056422.1 5086295..5087815(+) (comM) [Klebsiella aerogenes strain NY1464]
ATGTCACTCGCAATTGTCTATACCCGCGCGGCACTCGGGGTCAGCGCGCCGCTAATTACCGTCGAAGTCCATATCAGCAA
CGGACTACCCGGTTTGACGATGGTCGGCCTGCCGGAAACCACGGTAAAGGAAGCCCGCGATCGGGTACGTAGCGCCATTA
TTAACAGCGGCTACAGCTTTCCGGCAAAGAAGATAACTATAAACCTTGCGCCAGCCGATCTGCCAAAAGAGGGTGGGAGA
TATGATTTACCTATCGCTCTCGCGCTCCTGGTCGCTTCGCAGCAGCTTGCCGCACCGAAACTTAATCAGTATGAGTTTAT
TGGCGAATTGGCGCTTACAGGCGCGTTACGCGGCGTTCCTGGGGCAATATCCAGCGCCATGGAAGCGATAAAAGCCGGGA
GGCAGATTGTCGTTGCTGGAGATAACGCCGAAGAGGTCGGCTTGATTGGCGGCAATGAGTGCCTCACAGCCGGGCACCTA
CAGGAAGTCTGCGCGTTTCTGGAAGGGAAACATACTCTGCAGCCGCCGGCTGGCGAAATAACGGCGGGAGACGAGGATTA
TGACGATCTCGGCGATGTCATTGGCCAACAGCAGGGAAAACGCGCGCTGGAGATAGTCGCAGCGGGCGGTCACAATTTAC
TCTTGATGGGTCCACCGGGTACAGGAAAGACGATGCTCGCCAGCCGTTTGCCGGGGCTTTTACCGCCGCTAAGCAACCAG
GAAGCGCTGGAAAGCGCGGCTATCCTCAGCCTCGTCAATGCTCATTACGTCACGCGTCAGTGGCGTCGGCGGCCTTTTCG
CGCCCCTCACCATAGCGCTTCGCTAACGGCGATGGTCGGCGGCGGTTCAATCCCTGCCCCTGGGGAGATCTCCCTTGCGC
ATAACGGTATTCTGTTTCTTGATGAACTACCTGAATTCGAACGTCGGGTTCTGGATGCACTACGAGAGCCCATTGAATCA
GGAAAAATTCATCTTTCCCGCACTCGGGCTAAGATTGACTATCCTGCGCGATTTCAGTTGATTGCCGCCATGAATCCCAG
CCCAACAGGGCATTACCAGGGTCAGCACAATCGGGCCACACCGGAACAGACCCTACGCTACCTGGGCCGATTATCAGGGC
CATTTCTCGACCGATTCGATCTCTCGCTTGAAATTCCGCTCCCTCCACCGGGCGTATTAAGCCGGGGTGGCGTTGGCGAA
GAGCGAAGCGCCACTATTCGTCTACGGGTATTAGCGGCGCGTGACAGACAGCTCGCACGGCAGAATAAACTTAATGCGCA
ACTGGACAGCGGGGAGATAAAAGTCTGGTGCAAGCTGAAAGAAGACGACGCGATATGGCTGGAACAGACGCTCTCACTAT
TAGGGCTTTCAATCCGCGCATGGCAACGTTTACTGAAAGTTGCGCGTACTATCGCCGATCTTAATGAGGATAGGGATATT
GAACGTCATCATTTGCAGGAGGCGCTAAGCTACCGGGCTATCGACCGTATGTTAAATCATCTGCAGACGCTGATGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.079

100

0.601
  comM Haemophilus influenzae Rd KW20

59.216

100

0.597
  comM Vibrio campbellii strain DS40M4

59.802

99.802

0.597
  comM Glaesserella parasuis strain SC1401

58.858

100

0.591
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.443

Multiple sequence alignment