Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MOW14_RS12360 Genome accession   NZ_CP094258
Coordinates   2580608..2581243 (+) Length   211 a.a.
NCBI ID   WP_160232300.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2575608..2586243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW14_RS12350 (MOW14_12350) - 2577727..2578542 (-) 816 WP_180006592.1 NAD(P)H-binding protein -
  MOW14_RS12355 (MOW14_12355) recG 2578576..2580621 (+) 2046 WP_180006591.1 ATP-dependent DNA helicase RecG -
  MOW14_RS12360 (MOW14_12360) comF 2580608..2581243 (+) 636 WP_160232300.1 phosphoribosyltransferase family protein Machinery gene
  MOW14_RS12365 (MOW14_12365) - 2581266..2581667 (-) 402 WP_180006590.1 NUDIX domain-containing protein -
  MOW14_RS12370 (MOW14_12370) - 2581670..2582263 (-) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  MOW14_RS12375 (MOW14_12375) - 2582416..2583429 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  MOW14_RS12380 (MOW14_12380) - 2583569..2583856 (-) 288 WP_005180321.1 STAS domain-containing protein -
  MOW14_RS12385 (MOW14_12385) - 2583868..2584500 (-) 633 WP_104483948.1 ABC transporter substrate-binding protein -
  MOW14_RS12390 (MOW14_12390) - 2584519..2585190 (-) 672 WP_104473163.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MOW14_RS12395 (MOW14_12395) mlaE 2585190..2585969 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24394.40 Da        Isoelectric Point: 9.2130

>NTDB_id=668436 MOW14_RS12360 WP_160232300.1 2580608..2581243(+) (comF) [Acinetobacter indicus strain BDT201]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=668436 MOW14_RS12360 WP_160232300.1 2580608..2581243(+) (comF) [Acinetobacter indicus strain BDT201]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAAGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGTCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCTAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment