Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG242_RS13725 Genome accession   NZ_CP108981
Coordinates   3065207..3066619 (+) Length   470 a.a.
NCBI ID   WP_405898443.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3060207..3071619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG242_RS13705 (OG242_13685) - 3060540..3061367 (-) 828 WP_093708256.1 sugar phosphate isomerase/epimerase -
  OG242_RS13710 (OG242_13690) - 3061450..3062400 (-) 951 WP_405898441.1 Ppx/GppA family phosphatase -
  OG242_RS13715 (OG242_13695) - 3062539..3063315 (+) 777 WP_405901599.1 hypothetical protein -
  OG242_RS13720 (OG242_13700) - 3063329..3065071 (-) 1743 WP_405898442.1 hypothetical protein -
  OG242_RS13725 (OG242_13705) radA/sms 3065207..3066619 (+) 1413 WP_405898443.1 DNA repair protein RadA Machinery gene
  OG242_RS13730 (OG242_13710) disA 3066767..3067891 (+) 1125 WP_405898444.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG242_RS13735 (OG242_13715) - 3067914..3068684 (-) 771 WP_405901600.1 hypothetical protein -
  OG242_RS13740 (OG242_13720) - 3069018..3069920 (+) 903 WP_405898445.1 A/G-specific adenine glycosylase -
  OG242_RS13745 (OG242_13725) - 3070238..3070786 (+) 549 WP_405898446.1 SigE family RNA polymerase sigma factor -
  OG242_RS13750 (OG242_13730) - 3070774..3071493 (+) 720 WP_405898447.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49559.68 Da        Isoelectric Point: 8.0123

>NTDB_id=668435 OG242_RS13725 WP_405898443.1 3065207..3066619(+) (radA/sms) [Streptomyces sp. NBC_00727]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARPTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDEHRTLYVTAEESASQVRMRADRIHAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRALPRRTRAQAPREDDARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=668435 OG242_RS13725 WP_405898443.1 3065207..3066619(+) (radA/sms) [Streptomyces sp. NBC_00727]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTATCGCTGCACCGAATGCGGCTGGACCACCGCGAAGTGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGTGCCCCCGCCGTCCGGACCACGGCCGCGG
GCCGGGTGTCCACCGCCGCCCTGCCCATCGGCCAGGTCGACAGCCGGCAGGCCACGGCCCGGCCCACCGGCGTGGGCGAG
CTGGACCGGGTGCTGGGCGGAGGCCTGGTGCCCGGGGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCAC
GCTGCTGCTCGACGTCGCGGCGAAGGCGGCGACCGACGAGCACCGCACCTTGTATGTGACCGCTGAGGAGTCCGCGTCCC
AGGTCCGGATGCGGGCCGACCGGATCCACGCGATCAACGACCACCTGTACCTGGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGGCCACCTCGACGCGGTCAAGCCCTCGCTGCTGGTCCTGGACTCGGTGCAGACCGTGGCCTCGCCGGAGATCGAGGG
CGCGCCGGGCGGGATGGCGCAGGTCCGCGAGGTGGCGGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCGACGC
TGCTCGTGGGCCACGTCACCAAGGAGGGCGCGATCGCCGGGCCCCGGCTCCTGGAGCACCTGGTGGACGTGGTGCTGTCG
TTCGAGGGCGACCGCCATGCCCGGCTGCGTCTGGTGCGCGGCGTCAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGATCCGTCCGGCCTCTTCCTCACGCGGCGCGACGAGCCGGTGC
CGGGCACCTGCCTGACCGTGACCCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACGTCGGGCCTGGAGACGTCCCGGGTGTCGATGATGCTCGCGGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTGTCGGAGCCGGCCGCCGACC
TGGCCATCGCGCTGGCGCTGGCGAGCGCGGCGAGCGACACACCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGGCGGGTCACGGGGGTCCAGCGCCGGCTGGCCGAGGCGCACCGGCTGGGGTTCACGCACGCCCT
GGTCCCGACCGATCCGGGCAAGGTCCCGGCGGGTATGAAGGTGACGGAAGTGGCCGACATGGGCGACGCGCTCAGGGCGC
TCCCGCGCCGGACCCGCGCACAGGCCCCCCGGGAGGACGACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

41.978

96.809

0.406
  radA Streptococcus pneumoniae D39

41.978

96.809

0.406
  radA Streptococcus pneumoniae R6

41.978

96.809

0.406
  radA Streptococcus pneumoniae TIGR4

41.978

96.809

0.406
  radA Streptococcus mitis SK321

43.59

91.277

0.398
  radA Streptococcus mitis NCTC 12261

43.59

91.277

0.398