Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MOW12_RS13090 Genome accession   NZ_CP094254
Coordinates   2731903..2732538 (+) Length   211 a.a.
NCBI ID   WP_127799311.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT2076     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2726903..2737538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW12_RS13080 (MOW12_13080) - 2729022..2729837 (-) 816 WP_127799315.1 NAD(P)H-binding protein -
  MOW12_RS13085 (MOW12_13085) recG 2729871..2731916 (+) 2046 WP_127799313.1 ATP-dependent DNA helicase RecG -
  MOW12_RS13090 (MOW12_13090) comF 2731903..2732538 (+) 636 WP_127799311.1 phosphoribosyltransferase family protein Machinery gene
  MOW12_RS13095 (MOW12_13095) - 2732563..2732964 (-) 402 WP_127799309.1 NUDIX domain-containing protein -
  MOW12_RS13100 (MOW12_13100) - 2732967..2733560 (-) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  MOW12_RS13105 (MOW12_13105) - 2733713..2734726 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  MOW12_RS13110 (MOW12_13110) - 2734867..2735154 (-) 288 WP_127799307.1 STAS domain-containing protein -
  MOW12_RS13115 (MOW12_13115) - 2735166..2735798 (-) 633 WP_127799305.1 ABC transporter substrate-binding protein -
  MOW12_RS13120 (MOW12_13120) - 2735817..2736488 (-) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MOW12_RS13125 (MOW12_13125) mlaE 2736488..2737267 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24419.45 Da        Isoelectric Point: 9.2088

>NTDB_id=668398 MOW12_RS13090 WP_127799311.1 2731903..2732538(+) (comF) [Acinetobacter indicus strain BDT2076]
MPMFKLLAHSHTLFKKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=668398 MOW12_RS13090 WP_127799311.1 2731903..2732538(+) (comF) [Acinetobacter indicus strain BDT2076]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCATACGCTCTTTAAAAAGTTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGACTGTTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGTTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGGCTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTACGGCCCGATACCGGCCGGCCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGACGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55

Multiple sequence alignment