Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MON37_RS06740 Genome accession   NZ_CP094242
Coordinates   1448172..1448978 (-) Length   268 a.a.
NCBI ID   WP_003755523.1    Uniprot ID   A0A0C1GLM1
Organism   Morococcus cerebrosus strain CIP 81.93     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1443172..1453978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON37_RS06720 (MON37_06720) - 1443234..1443896 (-) 663 WP_039410029.1 YecA family protein -
  MON37_RS06725 (MON37_06725) - 1443967..1444932 (-) 966 WP_242883558.1 IS30 family transposase -
  MON37_RS06730 (MON37_06730) - 1445065..1446318 (-) 1254 WP_036492615.1 D-alanyl-D-alanine carboxypeptidase family protein -
  MON37_RS06735 (MON37_06735) ilvA 1446534..1448060 (+) 1527 WP_039409512.1 threonine ammonia-lyase, biosynthetic -
  MON37_RS06740 (MON37_06740) comL 1448172..1448978 (-) 807 WP_003755523.1 outer membrane protein assembly factor BamD Machinery gene
  MON37_RS06745 (MON37_06745) rluD 1448977..1450101 (+) 1125 WP_039409510.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MON37_RS06750 (MON37_06750) - 1450103..1450684 (+) 582 WP_242883560.1 hypothetical protein -
  MON37_RS06755 (MON37_06755) - 1450758..1451096 (+) 339 WP_242883561.1 hypothetical protein -
  MON37_RS06760 (MON37_06760) - 1451227..1451517 (+) 291 WP_039409506.1 hypothetical protein -
  MON37_RS06765 (MON37_06765) pgeF 1451570..1452343 (+) 774 WP_039409503.1 peptidoglycan editing factor PgeF -
  MON37_RS06770 (MON37_06770) yciA 1452448..1452885 (+) 438 WP_003742967.1 acyl-CoA thioester hydrolase YciA -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31211.21 Da        Isoelectric Point: 7.9863

>NTDB_id=668354 MON37_RS06740 WP_003755523.1 1448172..1448978(-) (comL) [Morococcus cerebrosus strain CIP 81.93]
MKKILLVVSLSLALGACASNKGTVDKDAQITQDWNVEKLYAEAHDELNSSNYTRAIKLYEILESRFPNGRYAQQAQLDTA
YAYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRSAYQAFAELVQRYPE
SKYAADATERMAKLVDALGGNEISVARYYMKRGAYLAAVNRAQKIVERYQNTRYVEESLAMMELAYKKLDKPQLAADTRR
VLETNFPQSPFLQHQWQPNDMPWWRYWR

Nucleotide


Download         Length: 807 bp        

>NTDB_id=668354 MON37_RS06740 WP_003755523.1 1448172..1448978(-) (comL) [Morococcus cerebrosus strain CIP 81.93]
ATGAAAAAAATTCTTTTAGTAGTTTCGTTAAGTCTGGCACTGGGTGCCTGTGCAAGCAATAAAGGTACGGTCGATAAAGA
CGCGCAAATCACACAAGATTGGAACGTGGAAAAACTCTATGCCGAAGCGCATGACGAGTTGAACAGCAGCAATTATACGC
GAGCCATCAAGTTATACGAAATTTTAGAATCCCGCTTCCCCAACGGCCGCTACGCGCAACAGGCGCAACTGGACACCGCA
TACGCCTATTACAAAGACGACGAGCCTGAAAAAGCCCTCGCCGCCATCGACCGCTTCCAGCGCCATCACCCGCAACATCC
GAATATGGATTACGCGCTTTACCTCAAAGGCTTGGTTTTGTTCAACGAAGACCAATCCTTCCTCAACAAACTCGCCTCCC
AAGACTGGTCCGACCGCGACCCTAAAGCCAACCGCAGCGCATACCAAGCGTTTGCCGAATTGGTACAACGCTATCCGGAG
AGCAAATACGCCGCCGACGCCACCGAGCGCATGGCAAAACTGGTGGACGCTTTGGGCGGTAACGAAATCTCCGTTGCCCG
CTACTACATGAAACGCGGCGCCTACCTCGCCGCAGTCAACCGCGCCCAAAAAATCGTCGAGCGTTACCAAAATACCCGCT
ACGTCGAAGAATCGCTCGCTATGATGGAGCTGGCTTACAAAAAACTGGACAAACCCCAACTCGCCGCCGACACCCGCCGC
GTCTTGGAAACCAACTTCCCGCAAAGCCCGTTCCTGCAACACCAATGGCAACCGAACGATATGCCTTGGTGGCGCTACTG
GCGTTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1GLM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

85.393

99.627

0.851
  comL Neisseria meningitidis MC58

85.393

99.627

0.851

Multiple sequence alignment