Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   MON40_RS08935 Genome accession   NZ_CP094241
Coordinates   1857961..1861602 (+) Length   1213 a.a.
NCBI ID   WP_003777749.1    Uniprot ID   A0AA36XLI7
Organism   Neisseria macacae ATCC 33926     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1852961..1866602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS08915 (MON40_08915) - 1853996..1854262 (-) 267 WP_003760069.1 hypothetical protein -
  MON40_RS08920 (MON40_08920) yhbY 1854467..1854751 (-) 285 WP_003760073.1 ribosome assembly RNA-binding protein YhbY -
  MON40_RS08925 (MON40_08925) - 1854860..1855480 (+) 621 WP_003777754.1 RlmE family RNA methyltransferase -
  MON40_RS08930 (MON40_08930) ftsH 1855545..1857536 (+) 1992 WP_003777751.1 ATP-dependent zinc metalloprotease FtsH -
  MON40_RS08935 (MON40_08935) recB 1857961..1861602 (+) 3642 WP_003777749.1 exodeoxyribonuclease V subunit beta Machinery gene
  MON40_RS08940 (MON40_08940) - 1861995..1862213 (-) 219 WP_003760086.1 YdcH family protein -
  MON40_RS08945 (MON40_08945) tssH 1862802..1865624 (-) 2823 WP_003777748.1 type VI secretion system ATPase TssH -
  MON40_RS08950 (MON40_08950) - 1865696..1866184 (-) 489 WP_003760091.1 Hcp family type VI secretion system effector -

Sequence

Protein


Download         Length: 1213 a.a.        Molecular weight: 136616.58 Da        Isoelectric Point: 4.9469

>NTDB_id=668314 MON40_RS08935 WP_003777749.1 1857961..1861602(+) (recB) [Neisseria macacae ATCC 33926]
MPANASIPAFDPLSIPIAGTNLIEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLQA
LESVEDTDNLSDDLEAYCRDNHPGDVFLTGLLKQALAQESRARLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCRV
PMDVELTEDNRDRLLIPAQDFWRDRIVNHPVLAKLVFQRRQTPQTMLAAIQKFVSRPYLVFRRPEADLIAAQENFRKTWE
KVRSKLDALEETFWRIRPILNGQSYQEKTFKTVFLELHSASQSDALPSFSKTTAEKLPMFAVEALASKVKKGNTPDAAAF
ADLQILANLGADSAAIAQAEEETLTLLHLDLLDHLNASLNEQKKSKRERGFDDLLLDVYDALTDNPQADSLAQAVAQNWR
IALIDEFQDTDPLQYEIFRKIFISQNKPLFLVGDPKQAIYSFRGADIYAYLQAAADAQHSYTLATNYRSHAKLINGIGAL
FRCKNRPFVLDGIDYTEVGAARSESRLSPPQTAIQIRWLNGKDDEVLNKDILRRRASEYCADEIAHTLNEAAEGRLKFKN
RPVVSGDIAVLVRTFNEGVMIAKALKTRGIQSVLLSRESVFTTPEALALAALLDYWLNPGQIGSLRFVLSGTLFGYDAQA
LYQLNHNEAELLNWINTSAESVAIWRKSGIYAALQHFSSLHGIETELLARGDERGLTNFHQLLECLSEEEGQSLSPAALH
QWLNDQISLAQDRSVGESGLLRLESDEALVKIVTMHASKGLQYPLVYCPFVWDAKDMKPADWQILHTADHTTELLAKSQL
NDEDRIHLADEEMAERLRLLYVALTRAEEQLVLYAAHCGDTADSPFAYLLEGSTDSNQVSTRQAYEQERKANKALGELQM
LKNNWLRFLKNPPEHTDFSFSEDAPQPAAAQNRHLSDDLYQAAVIPARGFQFIRHTSFTGLSRQVKTRDDEREELQPALD
PAETAAETERSSETALPVSDDLPNTDIHHFPRGANAGVCLHEMLEKFDFAQSTESQSSLIAETLTRYGFDLLWTDAVKQM
LDTCRKTRLVAQSLSEIPPERLLPEMGFTLYTEDFKLHDLRRWFARENSSLPPECIEAAERLDFQDVQGFLNGFIDMVCQ
DSDDLVCIIDYKSNHLGDSAEAYTQQAMNEAVADHHYYLQALIYAIAVARYFKLRGKPLPKIAIRYLFLRGLDGTDNGIW
QWDLDTESLAQWL

Nucleotide


Download         Length: 3642 bp        

>NTDB_id=668314 MON40_RS08935 WP_003777749.1 1857961..1861602(+) (recB) [Neisseria macacae ATCC 33926]
ATGCCCGCTAACGCCTCCATTCCAGCATTCGATCCCCTAAGCATCCCCATAGCAGGTACCAATCTGATTGAAGCCTCTGC
CGGCACGGGCAAAACCTACGGCATTGCGGCTTTGTTCACGCGCTTGGTCGTGCTTGAACAGATGCCGGTCGAAAGCATTT
TGACCGTTACTTTTACCAAGGCGGCAACGGCGGAATTGAAAACCCGTTTGCGCGCACGTTTGGACGAAGTATTGCAGGCT
TTGGAGAGCGTGGAGGATACGGACAATCTTTCAGACGACCTTGAAGCATACTGCCGAGACAATCATCCGGGCGATGTGTT
TCTGACCGGTTTGCTCAAACAGGCATTGGCTCAAGAAAGTCGGGCGCGGCTGATTGTCCGCCTCAAGGCTGCCATCGGGC
AATTCGACAACGCCGCGATTTATACCATTCACGGCTTCTGCCAACGCATTTTGCGCGATTATGCATTTTTGTGCCGCGTG
CCTATGGATGTTGAGTTGACCGAAGACAACCGCGACCGCCTGCTGATTCCCGCTCAAGATTTTTGGCGCGACCGCATCGT
CAATCATCCCGTTTTAGCGAAGTTGGTATTCCAACGCCGCCAAACGCCGCAAACCATGTTGGCGGCAATACAAAAGTTCG
TCAGCCGTCCGTATTTGGTTTTCAGACGACCCGAAGCAGACTTAATCGCCGCGCAGGAAAACTTTCGGAAAACATGGGAA
AAAGTGCGTTCCAAACTGGACGCTTTGGAAGAAACATTCTGGCGCATCCGTCCGATATTAAATGGGCAATCCTATCAAGA
AAAAACATTCAAGACCGTCTTTCTCGAACTCCACTCCGCCTCCCAATCCGATGCCCTTCCTTCTTTTAGCAAAACGACGG
CAGAAAAGCTGCCCATGTTTGCCGTAGAAGCTTTAGCGTCCAAAGTCAAAAAAGGCAATACTCCCGATGCTGCCGCCTTT
GCCGATTTGCAGATATTGGCGAATCTCGGCGCGGATTCGGCTGCCATCGCGCAAGCCGAAGAAGAGACGCTTACCCTGCT
CCACCTCGACCTGCTCGACCATCTTAATGCCAGTCTGAACGAACAGAAAAAATCCAAGCGCGAACGCGGTTTCGACGATT
TGCTGCTTGATGTTTACGACGCATTAACCGACAACCCGCAGGCCGATTCACTGGCTCAGGCGGTAGCTCAAAACTGGCGA
ATCGCTTTGATTGACGAATTTCAAGACACCGACCCGCTGCAATACGAAATCTTCCGAAAAATCTTCATCAGCCAAAACAA
GCCTTTATTCTTAGTCGGAGACCCGAAACAAGCCATTTACAGCTTTCGCGGCGCCGACATTTACGCCTATCTGCAAGCCG
CAGCAGACGCGCAACACAGCTACACGCTGGCGACCAATTACCGCAGCCATGCCAAGCTAATTAACGGCATAGGCGCATTG
TTCCGCTGCAAAAACCGTCCTTTCGTCTTAGACGGCATAGACTATACCGAAGTCGGCGCCGCACGTTCCGAAAGCCGGCT
TTCGCCGCCCCAAACCGCCATACAGATACGCTGGCTCAACGGCAAAGACGACGAAGTGCTCAACAAAGACATCTTGCGCC
GCCGTGCCTCCGAATATTGCGCCGACGAAATCGCCCACACGCTCAACGAAGCTGCCGAAGGTCGTCTGAAATTCAAAAAC
AGACCGGTCGTTTCAGGCGATATTGCCGTCTTGGTCAGGACGTTTAACGAAGGCGTGATGATAGCAAAAGCGCTGAAAAC
GCGCGGCATACAAAGCGTTTTACTCTCAAGGGAATCGGTTTTCACCACGCCGGAAGCCCTCGCCCTTGCCGCGCTGTTGG
ATTATTGGCTCAATCCCGGACAAATCGGCTCGCTGCGCTTCGTCTTATCCGGCACATTGTTCGGCTACGACGCGCAAGCC
TTGTATCAACTCAACCACAACGAAGCCGAATTATTAAACTGGATAAACACCTCCGCCGAATCCGTTGCCATTTGGCGGAA
AAGCGGGATTTATGCCGCGCTGCAACACTTCTCCTCGTTGCACGGCATCGAAACCGAATTGCTTGCACGCGGCGACGAGC
GCGGCCTCACCAATTTCCATCAGCTTTTAGAGTGTCTCTCCGAAGAAGAAGGACAAAGCCTCAGTCCCGCTGCCCTACAT
CAATGGCTCAACGACCAAATCAGTCTGGCGCAAGACCGATCTGTCGGCGAATCAGGGCTGTTACGGCTTGAAAGCGACGA
AGCACTGGTCAAAATTGTCACCATGCATGCCTCCAAAGGTTTGCAATATCCTTTGGTCTATTGCCCTTTCGTTTGGGACG
CGAAAGACATGAAGCCCGCCGATTGGCAAATCCTCCACACCGCCGACCACACCACGGAACTGCTTGCCAAATCGCAACTC
AACGATGAAGACCGTATCCACCTTGCCGACGAAGAAATGGCGGAACGCCTGCGCCTGCTGTACGTCGCGCTGACCCGTGC
CGAAGAGCAGCTCGTCCTTTATGCCGCCCATTGCGGCGATACCGCCGATTCCCCTTTCGCCTACCTGCTTGAAGGCAGCA
CCGACAGCAATCAGGTGTCTACCCGCCAAGCTTATGAACAAGAACGCAAAGCAAACAAAGCCCTAGGCGAGCTGCAAATG
CTGAAAAACAACTGGCTGCGTTTCCTCAAAAATCCTCCCGAACATACCGACTTCAGCTTTTCCGAAGACGCGCCGCAACC
CGCTGCCGCGCAAAACCGCCATCTTTCAGACGACCTCTATCAAGCCGCCGTTATCCCCGCCCGCGGATTTCAGTTCATCC
GGCATACCAGCTTTACCGGCCTCAGCCGCCAAGTCAAAACCCGAGACGACGAACGCGAAGAATTACAACCCGCACTCGAT
CCCGCAGAAACCGCCGCCGAAACAGAAAGGTCGTCTGAAACCGCCCTCCCCGTTTCAGACGACCTCCCGAATACCGACAT
CCACCATTTCCCGCGCGGCGCCAACGCTGGCGTCTGCCTGCATGAAATGTTGGAAAAATTCGACTTTGCCCAAAGCACCG
AAAGCCAAAGCAGCCTGATAGCCGAAACCTTGACCCGCTACGGCTTCGACCTACTCTGGACAGATGCCGTCAAACAAATG
CTCGACACCTGCCGCAAAACGCGCCTTGTTGCACAAAGCCTGTCTGAAATCCCACCCGAGCGCCTCCTTCCGGAAATGGG
ATTTACCCTCTACACCGAAGACTTCAAACTCCATGACCTGCGCCGCTGGTTTGCCCGCGAAAACAGTTCACTGCCGCCGG
AATGCATCGAAGCCGCAGAAAGATTAGATTTCCAAGACGTACAAGGTTTTCTCAACGGCTTCATCGACATGGTCTGCCAA
GATTCAGACGACCTTGTGTGCATCATCGATTACAAATCCAACCATCTGGGCGACAGCGCCGAAGCCTATACGCAACAAGC
CATGAACGAAGCCGTAGCAGACCACCACTACTACCTGCAAGCGCTCATCTACGCCATCGCCGTGGCCCGCTATTTCAAAC
TGCGCGGCAAACCGTTACCCAAAATCGCCATCCGATACCTCTTCCTGCGCGGATTGGACGGCACGGACAACGGCATCTGG
CAATGGGACTTGGATACCGAATCCTTAGCACAATGGCTGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(692-834)

UvrD-like helicase C-terminal domain (UvrD_C)

(461-655)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(995-1191)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(18-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

61.995

100

0.62

Multiple sequence alignment