Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MON40_RS05530 Genome accession   NZ_CP094241
Coordinates   1143479..1145704 (-) Length   741 a.a.
NCBI ID   WP_039862954.1    Uniprot ID   -
Organism   Neisseria macacae ATCC 33926     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1138479..1150704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS05505 (MON40_05505) xerD 1138895..1139770 (+) 876 WP_003778132.1 site-specific tyrosine recombinase XerD -
  MON40_RS05510 (MON40_05510) clpA 1139840..1142125 (-) 2286 WP_003778134.1 ATP-dependent Clp protease ATP-binding subunit ClpA -
  MON40_RS05515 (MON40_05515) clpS 1142127..1142438 (-) 312 WP_003755322.1 ATP-dependent Clp protease adapter ClpS -
  MON40_RS05520 (MON40_05520) - 1142751..1142954 (+) 204 WP_002217533.1 cold-shock protein -
  MON40_RS05525 (MON40_05525) - 1143037..1143264 (+) 228 WP_039862953.1 hypothetical protein -
  MON40_RS05530 (MON40_05530) comA 1143479..1145704 (-) 2226 WP_039862954.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MON40_RS05535 (MON40_05535) - 1145863..1146771 (-) 909 WP_003778142.1 Dyp-type peroxidase -
  MON40_RS05540 (MON40_05540) - 1146904..1147989 (+) 1086 WP_003778145.1 metallophosphoesterase -
  MON40_RS05545 (MON40_05545) - 1148270..1148470 (+) 201 WP_003755307.1 (2Fe-2S)-binding protein -
  MON40_RS05550 (MON40_05550) - 1148595..1148852 (+) 258 WP_003778149.1 glutaredoxin family protein -
  MON40_RS05555 (MON40_05555) - 1148961..1149395 (-) 435 WP_003778151.1 hypothetical protein -
  MON40_RS05560 (MON40_05560) - 1149388..1150695 (-) 1308 WP_003778152.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80193.04 Da        Isoelectric Point: 9.7576

>NTDB_id=668305 MON40_RS05530 WP_039862954.1 1143479..1145704(-) (comA) [Neisseria macacae ATCC 33926]
MLKYYGLPFWAVGVIASFALPFVPHWSAWLAAALVLLAASRRFAVAGMMLCVLLGAAYGVFRTEAALSAQWPLNGASESV
LTVEVADMPRGDGRRVQFAAKAWTEDGRRFDLLLSDYQKRDWAVGSRWKVSARLKPVIGEVNLRGLNREAWALANGLDGA
GTLGKGRSLVREGGGVGLAVWRDAVSRRWQAVGARSPDFSDGIGLMRALSIGEQSALRPELWQAFRPLGLTHLVSISGLH
VTMVAVLAGWLVKLIFRRLPWIPAKPRVWILAGGAAGALFYALLAGFSVPTQRSVLMLAAFAWAWWRGSLSSGWTAWWQA
LAVVLLLDPLAVLGVGTWLSFGLIAALIWASAGRLKECGWRLAVRGQWAATVLSVVLLGYIFASLPIISPLVNAAMIPWF
SWVLTPLALLGSVLPFAPLQWAAAGLAEYTLRGLVWLAEVSPEFAVAAAPVPLLVLAFAAALLWLLPRGLGLRPWACLVL
AGFVFYRPNRLDDGLARITVMDAGQGLSVLVQTRDRNLLFDTGTAQAAQTGIVPSLNAMGVRRLDTLILSHHDSDHDGGL
DAVSDIEIGETLAGQPEFYPNAKFCAEAQWQWDGVDFELLRSSENPVGEDNDRSCVLRVVSDGQALLVTGDLGVKGEAGL
VERYGSSLYSQILILGHHGSNTASSGGFLNTVSPKYAVASSGYANAYKHPTPAVQNRVRAHGATLLRTDLSGTLVFELGS
NEIFKGRLKRDKFYWQKKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=668305 MON40_RS05530 WP_039862954.1 1143479..1145704(-) (comA) [Neisseria macacae ATCC 33926]
TTGCTGAAATATTATGGATTGCCGTTTTGGGCAGTCGGCGTCATCGCTTCGTTCGCTTTGCCGTTTGTACCACATTGGAG
TGCGTGGCTGGCGGCGGCATTGGTTTTGCTGGCGGCTTCGCGGCGGTTTGCGGTGGCGGGAATGATGCTGTGCGTCCTGC
TCGGCGCGGCTTACGGCGTGTTTCGGACGGAAGCGGCTTTGTCGGCGCAATGGCCGCTGAACGGGGCTTCGGAGTCGGTG
TTGACGGTTGAAGTCGCAGATATGCCGCGCGGCGACGGGCGGCGGGTGCAGTTTGCGGCGAAGGCGTGGACGGAGGATGG
GCGGCGGTTTGATTTATTGCTGTCGGATTATCAGAAACGCGATTGGGCGGTGGGCAGCCGCTGGAAAGTGTCGGCACGGC
TCAAACCGGTTATCGGCGAAGTGAACCTGCGCGGGCTGAACCGCGAGGCTTGGGCGTTGGCAAACGGTTTGGATGGCGCG
GGTACGCTGGGCAAAGGCAGGAGCTTGGTTCGCGAGGGCGGCGGTGTCGGCTTGGCGGTGTGGCGCGATGCAGTCAGCCG
CCGTTGGCAGGCTGTCGGGGCGAGAAGTCCGGATTTTTCGGACGGTATCGGTCTGATGCGGGCTTTGAGCATAGGCGAAC
AATCGGCGTTGAGGCCCGAACTGTGGCAGGCGTTCCGACCTTTGGGTTTGACGCACTTGGTCAGTATTTCGGGGCTGCAC
GTTACGATGGTGGCGGTGTTGGCGGGTTGGCTGGTCAAACTGATTTTCAGACGACTGCCTTGGATACCGGCAAAACCACG
CGTGTGGATTTTGGCGGGCGGCGCGGCAGGGGCTTTGTTTTATGCGCTGCTGGCGGGCTTTTCCGTACCGACGCAGCGCA
GCGTTTTGATGTTGGCGGCGTTTGCCTGGGCTTGGTGGCGCGGCAGTCTGTCTTCGGGCTGGACGGCGTGGTGGCAGGCT
TTGGCGGTGGTGTTGCTGCTTGATCCATTGGCAGTTTTGGGTGTTGGCACTTGGCTGTCGTTCGGCTTGATTGCCGCCTT
GATTTGGGCTTCGGCAGGTCGTCTGAAAGAATGCGGCTGGCGTTTGGCTGTACGCGGACAATGGGCGGCGACGGTGTTGT
CGGTGGTATTGTTGGGCTATATTTTTGCGTCGTTGCCCATCATCAGCCCTTTGGTCAATGCGGCGATGATTCCTTGGTTT
TCTTGGGTATTGACGCCTTTGGCGCTGCTGGGGTCGGTGTTGCCGTTCGCGCCTTTGCAATGGGCGGCAGCAGGTTTGGC
GGAATACACTTTGCGCGGCTTGGTTTGGCTGGCGGAGGTGTCGCCTGAATTTGCCGTAGCCGCCGCGCCTGTGCCGCTGT
TGGTTTTGGCTTTTGCAGCGGCTTTGCTGTGGCTGTTGCCGCGCGGTCTGGGTTTGCGGCCTTGGGCGTGTTTGGTGTTG
GCTGGATTTGTGTTTTACCGCCCCAACCGCTTGGACGACGGGTTGGCGCGGATTACGGTGATGGATGCGGGACAGGGTTT
GTCGGTGTTGGTACAGACGCGCGACCGCAACCTGCTGTTTGACACGGGTACGGCGCAGGCGGCGCAAACGGGTATCGTGC
CAAGCCTGAACGCCATGGGCGTACGCCGTTTGGACACGCTGATTCTGTCGCATCACGACAGCGACCACGACGGCGGTTTG
GACGCCGTTTCCGATATTGAAATCGGCGAAACGCTGGCGGGACAGCCTGAGTTTTATCCGAACGCAAAATTTTGCGCCGA
AGCGCAATGGCAATGGGACGGCGTGGATTTCGAGTTATTGAGGTCGTCTGAAAACCCGGTCGGTGAAGACAATGACCGAA
GCTGCGTCTTGCGCGTCGTTTCCGACGGACAGGCATTGCTGGTTACGGGCGATTTGGGCGTCAAAGGCGAAGCGGGGCTG
GTAGAACGCTACGGCAGCTCGCTGTACAGCCAGATTTTGATATTGGGACACCACGGCAGCAATACGGCTTCATCCGGCGG
CTTCCTGAACACGGTCTCCCCCAAATACGCCGTCGCTTCCAGCGGCTACGCCAACGCCTACAAACACCCCACTCCCGCCG
TCCAAAACCGCGTCCGCGCACACGGCGCGACTTTGTTGCGGACGGATTTGTCGGGTACATTAGTGTTTGAGTTGGGCAGT
AATGAAATCTTTAAAGGTCGTCTGAAAAGGGATAAGTTTTATTGGCAGAAAAAGCCGTTTGAGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

72.335

100

0.723

Multiple sequence alignment