Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MON40_RS05115 Genome accession   NZ_CP094241
Coordinates   1060026..1060832 (-) Length   268 a.a.
NCBI ID   WP_003755523.1    Uniprot ID   A0A0C1GLM1
Organism   Neisseria macacae ATCC 33926     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1055026..1065832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS05090 (MON40_05090) - 1057482..1057916 (+) 435 WP_003764337.1 DUF883 family protein -
  MON40_RS05095 (MON40_05095) - 1058058..1058456 (+) 399 WP_003779322.1 phage holin family protein -
  MON40_RS05100 (MON40_05100) - 1058449..1058718 (+) 270 WP_242926014.1 hypothetical protein -
  MON40_RS05105 (MON40_05105) - 1058719..1058994 (+) 276 WP_242926015.1 hypothetical protein -
  MON40_RS05110 (MON40_05110) - 1059368..1059733 (-) 366 WP_003779325.1 DUF3969 family protein -
  MON40_RS05115 (MON40_05115) comL 1060026..1060832 (-) 807 WP_003755523.1 outer membrane protein assembly factor BamD Machinery gene
  MON40_RS05120 (MON40_05120) rluD 1060831..1061955 (+) 1125 WP_003779326.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MON40_RS05125 (MON40_05125) - 1061957..1062538 (+) 582 WP_039863151.1 hypothetical protein -
  MON40_RS05130 (MON40_05130) pgeF 1062766..1063536 (+) 771 WP_003779329.1 peptidoglycan editing factor PgeF -
  MON40_RS05135 (MON40_05135) - 1063781..1064491 (+) 711 WP_003779331.1 class I SAM-dependent methyltransferase -
  MON40_RS05140 (MON40_05140) - 1064565..1065122 (+) 558 WP_242926016.1 hypothetical protein -
  MON40_RS13365 - 1065180..1065308 (+) 129 WP_003779336.1 hypothetical protein -
  MON40_RS05145 (MON40_05145) - 1065356..1065736 (+) 381 WP_003779337.1 VOC family protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31211.21 Da        Isoelectric Point: 7.9863

>NTDB_id=668303 MON40_RS05115 WP_003755523.1 1060026..1060832(-) (comL) [Neisseria macacae ATCC 33926]
MKKILLVVSLSLALGACASNKGTVDKDAQITQDWNVEKLYAEAHDELNSSNYTRAIKLYEILESRFPNGRYAQQAQLDTA
YAYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRSAYQAFAELVQRYPE
SKYAADATERMAKLVDALGGNEISVARYYMKRGAYLAAVNRAQKIVERYQNTRYVEESLAMMELAYKKLDKPQLAADTRR
VLETNFPQSPFLQHQWQPNDMPWWRYWR

Nucleotide


Download         Length: 807 bp        

>NTDB_id=668303 MON40_RS05115 WP_003755523.1 1060026..1060832(-) (comL) [Neisseria macacae ATCC 33926]
ATGAAAAAAATTCTTTTAGTAGTTTCGTTAAGTCTGGCACTGGGTGCCTGTGCAAGCAATAAAGGTACGGTCGATAAAGA
CGCGCAAATCACACAAGATTGGAACGTGGAAAAACTCTATGCCGAAGCGCATGACGAGTTGAACAGCAGCAATTATACGC
GAGCCATCAAGTTATACGAAATTTTAGAATCCCGCTTCCCCAACGGCCGCTACGCGCAACAGGCGCAACTGGATACCGCA
TACGCCTATTACAAAGACGACGAGCCTGAAAAAGCCCTCGCCGCCATCGACCGCTTCCAGCGCCATCACCCGCAACATCC
GAATATGGATTACGCGCTTTACCTCAAAGGCTTGGTTTTGTTCAACGAAGACCAATCCTTCCTCAACAAACTCGCCTCCC
AAGACTGGTCCGACCGCGACCCTAAAGCCAACCGCAGCGCATACCAAGCGTTTGCCGAATTGGTACAACGCTATCCGGAG
AGCAAATACGCCGCCGACGCCACCGAGCGCATGGCAAAACTGGTGGACGCTTTGGGCGGTAACGAAATCTCCGTTGCCCG
CTACTACATGAAACGCGGCGCCTACCTCGCCGCAGTCAACCGCGCCCAAAAAATCGTCGAGCGTTACCAAAATACCCGCT
ACGTCGAAGAATCGCTCGCTATGATGGAGCTGGCTTACAAAAAACTGGACAAACCCCAACTCGCCGCCGACACCCGCCGC
GTCTTGGAAACCAACTTCCCGCAAAGCCCGTTTCTGCAACACCAATGGCAGCCGAACGATATGCCTTGGTGGCGCTACTG
GCGTTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1GLM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

85.393

99.627

0.851
  comL Neisseria meningitidis MC58

85.393

99.627

0.851

Multiple sequence alignment