Detailed information NTG0668150

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MOO48_RS11955
• Genome accession: NZ_CP094227
• Coordinates: 2491571..2492371 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Bio3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2486571..2497371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MOO48_RS11935 (MOO48_11935)	dksA	2487151..2487606 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
MOO48_RS11940 (MOO48_11940)	sfsA	2487769..2488485 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
MOO48_RS11945 (MOO48_11945)	thpR	2488485..2489021 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
MOO48_RS11950 (MOO48_11950)	hrpB	2489094..2491523 (+)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
MOO48_RS11955 (MOO48_11955)	pilD	2491571..2492371 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
MOO48_RS11960 (MOO48_11960)	-	2492368..2493114 (-)	747	WP_004178605.1	type II secretion system protein N	-
MOO48_RS11965 (MOO48_11965)	-	2493104..2493589 (-)	486	WP_004145896.1	type II secretion system protein M	-
MOO48_RS11970 (MOO48_11970)	gspL	2493582..2494775 (-)	1194	WP_004194919.1	type II secretion system protein GspL	-
MOO48_RS11975 (MOO48_11975)	gspK	2494762..2495748 (-)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
MOO48_RS11980 (MOO48_11980)	gspJ	2495745..2496341 (-)	597	WP_004178612.1	type II secretion system minor pseudopilin GspJ	-
MOO48_RS11985 (MOO48_11985)	gspI	2496338..2496703 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
MOO48_RS11990 (MOO48_11990)	gspH	2496700..2497215 (-)	516	WP_004194939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=668150 MOO48_RS11955 WP_004145898.1 2491571..2492371(-) (pilD) [Klebsiella pneumoniae strain Bio3]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=668150 MOO48_RS11955 WP_004145898.1 2491571..2492371(-) (pilD) [Klebsiella pneumoniae strain Bio3]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCATGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425