Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   MP387_RS02735 Genome accession   NZ_CP094226
Coordinates   549540..550772 (+) Length   410 a.a.
NCBI ID   WP_061420517.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 544540..555772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS02700 (MP387_02700) galE 545212..546231 (+) 1020 WP_001156532.1 UDP-glucose 4-epimerase GalE -
  MP387_RS02705 (MP387_02705) - 546233..547198 (+) 966 WP_242747514.1 glycosyltransferase family 2 protein -
  MP387_RS02710 (MP387_02710) - 547274..547477 (-) 204 WP_002874767.1 ferredoxin -
  MP387_RS02715 (MP387_02715) - 547523..548029 (+) 507 WP_076984714.1 SAG1386/EF1546 family surface-associated protein -
  MP387_RS02720 (MP387_02720) cmk 548039..548713 (+) 675 WP_242747516.1 (d)CMP kinase -
  MP387_RS02725 (MP387_02725) - 548832..549338 (+) 507 WP_139658410.1 dihydrofolate reductase -
  MP387_RS02730 (MP387_02730) - 549338..549508 (+) 171 WP_000442252.1 hypothetical protein -
  MP387_RS02735 (MP387_02735) clpX 549540..550772 (+) 1233 WP_061420517.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  MP387_RS02740 (MP387_02740) yihA 550781..551368 (+) 588 WP_242747518.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  MP387_RS02745 (MP387_02745) - 551378..551758 (+) 381 WP_001140417.1 RidA family protein -
  MP387_RS02750 (MP387_02750) rapZ 551811..552701 (+) 891 WP_000163039.1 RNase adapter RapZ -
  MP387_RS02755 (MP387_02755) - 552698..553675 (+) 978 WP_242747520.1 YvcK family protein -
  MP387_RS02760 (MP387_02760) whiA 553672..554583 (+) 912 WP_049505290.1 DNA-binding protein WhiA -
  MP387_RS02765 (MP387_02765) - 554616..555584 (-) 969 WP_242747522.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45714.28 Da        Isoelectric Point: 4.4581

>NTDB_id=668097 MP387_RS02735 WP_061420517.1 549540..550772(+) (clpX) [Streptococcus oralis strain 1648]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=668097 MP387_RS02735 WP_061420517.1 549540..550772(+) (clpX) [Streptococcus oralis strain 1648]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCCGAGGAAG
TCTTGGCAGACTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCTTAAACCACTATGTGATTGGTCAGGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTATACAATCACTATAAACGCATTAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAATATCCTGATGATTGGTCCAACTGGTTCTGGGAAAACTTTCTTGGCTCAGACTTTGGCTA
GGAGCTTGAACGTGCCTTTTGCTATTGCAGATGCGACAGCTCTGACTGAGGCTGGGTATGTGGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAGCGTGGGATTATCTACGTAGATGAAATTGA
CAAAATTGCCAAGAAGAGCGAGAATGTGTCTATCACACGTGACGTTTCGGGCGAAGGGGTACAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTAGCCAGCGTGCCACCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAGGTGGATACT
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGCATCGAAGAAATCGTTAAACAACGTCTGGGTGAGAAAGTTAT
TGGATTTGGTCAAAACAACAAGGCGATTGACGAAAACAGCTCCTACATGCAAGAAATCATCGCAGAAGACATTCAAAAAT
TCGGGATTATCCCTGAGTTGATTGGACGCTTGCCTGTATTTGCTGCTCTTGAGCAATTGACGGTTGATGACTTGGTTCGC
ATCCTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGATGAAGCCCTTCAGGAAATCGCCAATAAGGCTATCGAACGCAAAACTGGTGCGCGTGGTCTTCGGTCTATTATCGAAG
AAACCATGCTAGACGTTATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment