Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPF93_RS00725 | Genome accession | NZ_CP094178 |
| Coordinates | 151175..152230 (+) | Length | 351 a.a. |
| NCBI ID | WP_245073944.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe060 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 146175..157230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF93_RS00690 (MPF93_00690) | - | 146271..146456 (-) | 186 | WP_245073938.1 | hypothetical protein | - |
| MPF93_RS00695 (MPF93_00695) | - | 146598..147011 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| MPF93_RS00700 (MPF93_00700) | - | 147031..147306 (+) | 276 | WP_000784960.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPF93_RS00705 (MPF93_00705) | - | 147306..149528 (+) | 2223 | WP_245073940.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPF93_RS00710 (MPF93_00710) | panD | 149518..149868 (+) | 351 | WP_000142272.1 | aspartate 1-decarboxylase | - |
| MPF93_RS00715 (MPF93_00715) | - | 149879..150172 (+) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPF93_RS00720 (MPF93_00720) | - | 150172..151167 (+) | 996 | WP_245073942.1 | PDZ domain-containing protein | - |
| MPF93_RS00725 (MPF93_00725) | comB6 | 151175..152230 (+) | 1056 | WP_245073944.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPF93_RS00730 (MPF93_00730) | comB7 | 152246..152371 (+) | 126 | WP_001217865.1 | hypothetical protein | Machinery gene |
| MPF93_RS00735 (MPF93_00735) | comB8 | 152368..153111 (+) | 744 | WP_245073946.1 | virB8 family protein | Machinery gene |
| MPF93_RS00740 (MPF93_00740) | comB9 | 153111..154073 (+) | 963 | WP_180506423.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPF93_RS00745 (MPF93_00745) | comB10 | 154066..155202 (+) | 1137 | WP_245073948.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPF93_RS00750 (MPF93_00750) | - | 155268..156671 (+) | 1404 | WP_245073950.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39815.70 Da Isoelectric Point: 8.8294
>NTDB_id=668050 MPF93_RS00725 WP_245073944.1 151175..152230(+) (comB6) [Helicobacter pylori strain Hpfe060]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETHKLATNLSANLSQNALNSLQYITTPPASSSVSSSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETHKLATNLSANLSQNALNSLQYITTPPASSSVSSSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=668050 MPF93_RS00725 WP_245073944.1 151175..152230(+) (comB6) [Helicobacter pylori strain Hpfe060]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTCTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAATTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTATAAGCCTTTTTTGTTGCTGG
TAGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTCACAAACTCGCCACCAATTTGAGCGCCAACCTTAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTCTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAATTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTATAAGCCTTTTTTGTTGCTGG
TAGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTCACAAACTCGCCACCAATTTGAGCGCCAACCTTAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
97.151 |
100 |
0.972 |