Detailed information NTG0668053

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF93_RS00740
• Genome accession: NZ_CP094178
• Coordinates: 153111..154073 (+)
• Length: 320 a.a.
• NCBI ID: WP_180506423.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe060
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148111..159073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF93_RS00710 (MPF93_00710)	panD	149518..149868 (+)	351	WP_000142272.1	aspartate 1-decarboxylase	-
MPF93_RS00715 (MPF93_00715)	-	149879..150172 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPF93_RS00720 (MPF93_00720)	-	150172..151167 (+)	996	WP_245073942.1	PDZ domain-containing protein	-
MPF93_RS00725 (MPF93_00725)	comB6	151175..152230 (+)	1056	WP_245073944.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF93_RS00730 (MPF93_00730)	comB7	152246..152371 (+)	126	WP_001217865.1	hypothetical protein	Machinery gene
MPF93_RS00735 (MPF93_00735)	comB8	152368..153111 (+)	744	WP_245073946.1	virB8 family protein	Machinery gene
MPF93_RS00740 (MPF93_00740)	comB9	153111..154073 (+)	963	WP_180506423.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF93_RS00745 (MPF93_00745)	comB10	154066..155202 (+)	1137	WP_245073948.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF93_RS00750 (MPF93_00750)	-	155268..156671 (+)	1404	WP_245073950.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF93_RS00755 (MPF93_00755)	gmd	156695..157840 (+)	1146	WP_245073952.1	GDP-mannose 4,6-dehydratase	-
MPF93_RS00760 (MPF93_00760)	-	157833..158765 (+)	933	WP_245073954.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36771.36 Da
• Isoelectric Point: 9.3756

>NTDB_id=668053 MPF93_RS00740 WP_180506423.1 153111..154073(+) (comB9) [Helicobacter pylori strain Hpfe060]
MRKVLCTLVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=668053 MPF93_RS00740 WP_180506423.1 153111..154073(+) (comB9) [Helicobacter pylori strain Hpfe060]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGTTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.941