Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPF93_RS00290 | Genome accession | NZ_CP094178 |
| Coordinates | 64017..64592 (+) | Length | 191 a.a. |
| NCBI ID | WP_245073839.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe060 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 59017..69592
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF93_RS00265 (MPF93_00265) | uvrD | 59708..61753 (+) | 2046 | WP_245073831.1 | DNA helicase UvrD | - |
| MPF93_RS00270 (MPF93_00270) | flgA | 61750..62406 (+) | 657 | WP_245073833.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPF93_RS00275 (MPF93_00275) | - | 62416..62979 (+) | 564 | WP_120933757.1 | UbiX family flavin prenyltransferase | - |
| MPF93_RS00280 (MPF93_00280) | coaD | 62979..63452 (+) | 474 | WP_245073835.1 | pantetheine-phosphate adenylyltransferase | - |
| MPF93_RS00285 (MPF93_00285) | tmk | 63454..64029 (+) | 576 | WP_245073837.1 | dTMP kinase | - |
| MPF93_RS00290 (MPF93_00290) | comFC | 64017..64592 (+) | 576 | WP_245073839.1 | ComF family protein | Machinery gene |
| MPF93_RS00295 (MPF93_00295) | - | 64625..66664 (+) | 2040 | WP_245073841.1 | N-6 DNA methylase | - |
| MPF93_RS00300 (MPF93_00300) | - | 66661..67929 (+) | 1269 | WP_245073843.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21363.01 Da Isoelectric Point: 9.4455
>NTDB_id=668049 MPF93_RS00290 WP_245073839.1 64017..64592(+) (comFC) [Helicobacter pylori strain Hpfe060]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSATLLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSATLLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=668049 MPF93_RS00290 WP_245073839.1 64017..64592(+) (comFC) [Helicobacter pylori strain Hpfe060]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCACGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCACTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCACGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCACTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |