Detailed information NTG0667963

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG23_RS00700
• Genome accession: NZ_CP094172
• Coordinates: 149795..150757 (+)
• Length: 320 a.a.
• NCBI ID: WP_245088628.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0002
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144795..155757

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG23_RS00670 (MPG23_00670)	panD	146202..146552 (+)	351	WP_180415978.1	aspartate 1-decarboxylase	-
MPG23_RS00675 (MPG23_00675)	-	146563..146856 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG23_RS00680 (MPG23_00680)	-	146856..147851 (+)	996	WP_245089673.1	PDZ domain-containing protein	-
MPG23_RS00685 (MPG23_00685)	comB6	147859..148914 (+)	1056	WP_245089676.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG23_RS00690 (MPG23_00690)	comB7	148930..149055 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG23_RS00695 (MPG23_00695)	comB8	149052..149795 (+)	744	WP_245088626.1	virB8 family protein	Machinery gene
MPG23_RS00700 (MPG23_00700)	comB9	149795..150757 (+)	963	WP_245088628.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG23_RS00705 (MPG23_00705)	comB10	150750..151886 (+)	1137	WP_245088630.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG23_RS00710 (MPG23_00710)	-	151956..153368 (+)	1413	WP_245088632.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG23_RS00715 (MPG23_00715)	gmd	153383..154528 (+)	1146	WP_245088634.1	GDP-mannose 4,6-dehydratase	-
MPG23_RS00720 (MPG23_00720)	-	154521..155453 (+)	933	WP_180448322.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36867.50 Da
• Isoelectric Point: 9.4889

>NTDB_id=667963 MPG23_RS00700 WP_245088628.1 149795..150757(+) (comB9) [Helicobacter pylori strain Hpfe0002]
MRKVLCALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPKNNKPLKEEKEETKEEETITIGDNTNAMKIIKKDIQRDYRALKSSQRKWYCLGICSKKSK
LSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667963 MPG23_RS00700 WP_245088628.1 149795..150757(+) (comB9) [Helicobacter pylori strain Hpfe0002]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGTTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAATGCCCCAAAAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAAACTATAACGATTGGCGATAACACTAATGCAATGAAAATCATTAAAAAAG
ACATTCAAAGAGACTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAG
CTCTCTTTGATGCCTAAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.941