Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPF82_RS00260 | Genome accession | NZ_CP094170 |
| Coordinates | 58377..58952 (+) | Length | 191 a.a. |
| NCBI ID | WP_245089853.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0004 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 53377..63952
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF82_RS00235 (MPF82_00235) | uvrD | 54068..56113 (+) | 2046 | WP_245089846.1 | DNA helicase UvrD | - |
| MPF82_RS00240 (MPF82_00240) | flgA | 56110..56766 (+) | 657 | WP_245089848.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPF82_RS00245 (MPF82_00245) | - | 56776..57339 (+) | 564 | WP_000780124.1 | UbiX family flavin prenyltransferase | - |
| MPF82_RS00250 (MPF82_00250) | coaD | 57339..57812 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| MPF82_RS00255 (MPF82_00255) | tmk | 57814..58389 (+) | 576 | WP_245089850.1 | dTMP kinase | - |
| MPF82_RS00260 (MPF82_00260) | comFC | 58377..58952 (+) | 576 | WP_245089853.1 | ComF family protein | Machinery gene |
| MPF82_RS00265 (MPF82_00265) | - | 58985..61024 (+) | 2040 | WP_245089855.1 | N-6 DNA methylase | - |
| MPF82_RS00270 (MPF82_00270) | - | 61021..61662 (+) | 642 | WP_245089857.1 | restriction endonuclease subunit S | - |
| MPF82_RS00275 (MPF82_00275) | - | 61689..62219 (+) | 531 | WP_245089858.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21321.96 Da Isoelectric Point: 9.4455
>NTDB_id=667918 MPF82_RS00260 WP_245089853.1 58377..58952(+) (comFC) [Helicobacter pylori strain Hpfe0004]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLESVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLESVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=667918 MPF82_RS00260 WP_245089853.1 58377..58952(+) (comFC) [Helicobacter pylori strain Hpfe0004]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGAGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGCTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGAGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGCTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |