Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG42_RS05395 Genome accession   NZ_CP094167
Coordinates   1131628..1132032 (-) Length   134 a.a.
NCBI ID   WP_060758111.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126628..1137032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG42_RS05360 (MPG42_05360) - 1126725..1127888 (-) 1164 WP_245028153.1 hypothetical protein -
  MPG42_RS05365 (MPG42_05365) - 1127878..1128663 (-) 786 WP_245028154.1 hypothetical protein -
  MPG42_RS05370 (MPG42_05370) - 1128669..1129055 (-) 387 WP_154423216.1 DUF1294 domain-containing protein -
  MPG42_RS05375 (MPG42_05375) - 1129382..1130038 (-) 657 WP_342370347.1 lysozyme -
  MPG42_RS05380 (MPG42_05380) - 1130067..1130627 (-) 561 WP_245028156.1 hypothetical protein -
  MPG42_RS05385 (MPG42_05385) - 1130611..1130949 (-) 339 WP_000699916.1 hypothetical protein -
  MPG42_RS05390 (MPG42_05390) - 1131135..1131496 (-) 362 Protein_1051 tetratricopeptide repeat protein -
  MPG42_RS05395 (MPG42_05395) dprB 1131628..1132032 (-) 405 WP_060758111.1 Holliday junction resolvase RuvX Machinery gene
  MPG42_RS05400 (MPG42_05400) dprA 1132029..1132829 (-) 801 WP_245013734.1 DNA-processing protein DprA Machinery gene
  MPG42_RS05405 (MPG42_05405) minE 1132841..1133074 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG42_RS05410 (MPG42_05410) minD 1133071..1133877 (-) 807 WP_140596164.1 septum site-determining protein MinD -
  MPG42_RS05415 (MPG42_05415) ilvC 1133902..1134894 (-) 993 WP_245013733.1 ketol-acid reductoisomerase -
  MPG42_RS05425 (MPG42_05425) - 1135143..1135925 (+) 783 WP_245028157.1 NAD+ synthase -
  MPG42_RS05430 (MPG42_05430) - 1135922..1136860 (+) 939 WP_096400335.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15224.69 Da        Isoelectric Point: 9.1725

>NTDB_id=667887 MPG42_RS05395 WP_060758111.1 1131628..1132032(-) (dprB) [Helicobacter pylori strain Hpfe0007]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667887 MPG42_RS05395 WP_060758111.1 1131628..1132032(-) (dprB) [Helicobacter pylori strain Hpfe0007]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGTGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAATGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGAATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948

Multiple sequence alignment