Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG42_RS00255 | Genome accession | NZ_CP094167 |
| Coordinates | 58416..58991 (+) | Length | 191 a.a. |
| NCBI ID | WP_245028479.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0007 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 53416..63991
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG42_RS00230 (MPG42_00230) | uvrD | 54107..56152 (+) | 2046 | WP_245013543.1 | DNA helicase UvrD | - |
| MPG42_RS00235 (MPG42_00235) | flgA | 56149..56805 (+) | 657 | WP_245013544.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG42_RS00240 (MPG42_00240) | - | 56815..57378 (+) | 564 | WP_220848213.1 | UbiX family flavin prenyltransferase | - |
| MPG42_RS00245 (MPG42_00245) | coaD | 57378..57851 (+) | 474 | WP_015429486.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG42_RS00250 (MPG42_00250) | tmk | 57853..58428 (+) | 576 | WP_245013545.1 | dTMP kinase | - |
| MPG42_RS00255 (MPG42_00255) | comFC | 58416..58991 (+) | 576 | WP_245028479.1 | ComF family protein | Machinery gene |
| MPG42_RS00260 (MPG42_00260) | - | 59024..61071 (+) | 2048 | Protein_50 | N-6 DNA methylase | - |
| MPG42_RS00265 (MPG42_00265) | - | 61068..61706 (+) | 639 | WP_245028481.1 | restriction endonuclease subunit S | - |
| MPG42_RS00270 (MPG42_00270) | - | 61676..62290 (+) | 615 | WP_245028483.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21413.11 Da Isoelectric Point: 9.4390
>NTDB_id=667876 MPG42_RS00255 WP_245028479.1 58416..58991(+) (comFC) [Helicobacter pylori strain Hpfe0007]
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSATLLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSATLLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=667876 MPG42_RS00255 WP_245028479.1 58416..58991(+) (comFC) [Helicobacter pylori strain Hpfe0007]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATATG
CGCTGATTGGCTCTCGCATTTTGCCCTTACTTTCTCAAAAAGCCGGCACGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCACGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGACAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACTGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCATTTTGCAATCGCACTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATATG
CGCTGATTGGCTCTCGCATTTTGCCCTTACTTTCTCAAAAAGCCGGCACGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCACGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGACAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACTGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCATTTTGCAATCGCACTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
92.67 |
100 |
0.927 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
38.144 |
100 |
0.387 |