Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MPG18_RS00270 Genome accession   NZ_CP094165
Coordinates   62968..63543 (+) Length   191 a.a.
NCBI ID   WP_245078051.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0011     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57968..68543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG18_RS00245 (MPG18_00245) uvrD 58659..60704 (+) 2046 WP_245078048.1 DNA helicase UvrD -
  MPG18_RS00250 (MPG18_00250) flgA 60701..61357 (+) 657 WP_245078049.1 flagellar basal body P-ring formation chaperone FlgA -
  MPG18_RS00255 (MPG18_00255) - 61367..61930 (+) 564 WP_154423516.1 UbiX family flavin prenyltransferase -
  MPG18_RS00260 (MPG18_00260) coaD 61930..62403 (+) 474 WP_001169259.1 pantetheine-phosphate adenylyltransferase -
  MPG18_RS00265 (MPG18_00265) tmk 62405..62980 (+) 576 WP_245078050.1 dTMP kinase -
  MPG18_RS00270 (MPG18_00270) comFC 62968..63543 (+) 576 WP_245078051.1 ComF family protein Machinery gene
  MPG18_RS00275 (MPG18_00275) - 63576..63962 (+) 387 Protein_54 VRR-NUC domain-containing protein -
  MPG18_RS00280 (MPG18_00280) - 63953..64721 (-) 769 Protein_55 Eco47II family restriction endonuclease -
  MPG18_RS00290 (MPG18_00290) dcm 64690..65721 (-) 1032 WP_342373709.1 DNA (cytosine-5-)-methyltransferase -
  MPG18_RS00295 (MPG18_00295) - 65771..65938 (+) 168 Protein_57 restriction endonuclease subunit S -
  MPG18_RS00300 (MPG18_00300) - 65943..66425 (-) 483 WP_245078056.1 hypothetical protein -
  MPG18_RS00310 (MPG18_00310) - 66519..67371 (+) 853 Protein_59 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21323.89 Da        Isoelectric Point: 8.8864

>NTDB_id=667852 MPG18_RS00270 WP_245078051.1 62968..63543(+) (comFC) [Helicobacter pylori strain Hpfe0011]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRASNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=667852 MPG18_RS00270 WP_245078051.1 62968..63543(+) (comFC) [Helicobacter pylori strain Hpfe0011]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366

Multiple sequence alignment