Detailed information NTG0667834

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG84_RS00710
• Genome accession: NZ_CP094164
• Coordinates: 152344..153309 (+)
• Length: 321 a.a.
• NCBI ID: WP_245059604.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0012
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147344..158309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG84_RS00680 (MPG84_00680)	panD	148751..149101 (+)	351	WP_180403071.1	aspartate 1-decarboxylase	-
MPG84_RS00685 (MPG84_00685)	-	149112..149405 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG84_RS00690 (MPG84_00690)	-	149405..150400 (+)	996	WP_245060136.1	PDZ domain-containing protein	-
MPG84_RS00695 (MPG84_00695)	comB6	150408..151463 (+)	1056	WP_245060138.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG84_RS00700 (MPG84_00700)	comB7	151479..151604 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG84_RS00705 (MPG84_00705)	comB8	151601..152344 (+)	744	WP_245059603.1	virB8 family protein	Machinery gene
MPG84_RS00710 (MPG84_00710)	comB9	152344..153309 (+)	966	WP_245059604.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG84_RS00715 (MPG84_00715)	comB10	153302..154438 (+)	1137	WP_245059605.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG84_RS00720 (MPG84_00720)	-	154508..155920 (+)	1413	WP_245059606.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG84_RS00725 (MPG84_00725)	gmd	155935..157080 (+)	1146	WP_245059607.1	GDP-mannose 4,6-dehydratase	-
MPG84_RS00730 (MPG84_00730)	-	157073..158005 (+)	933	WP_245059608.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36827.38 Da
• Isoelectric Point: 9.2454

>NTDB_id=667834 MPG84_RS00710 WP_245059604.1 152344..153309(+) (comB9) [Helicobacter pylori strain Hpfe0012]
MRKVLCTLVGFLLVSSALKADDFLEEANETASANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENILENALTNNNKPLKEEKEETKEEETITIGDNANAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667834 MPG84_RS00710 WP_245059604.1 152344..153309(+) (comB9) [Helicobacter pylori strain Hpfe0012]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCTCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAAAG
TAACGATCGCATTTTACTCATCAAACCTCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATATCCTTGAAAATGCTCTCACAAACAATAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACGCTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.411	100	0.928