Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG03_RS00275 | Genome accession | NZ_CP094160 |
| Coordinates | 62917..63492 (+) | Length | 191 a.a. |
| NCBI ID | WP_245021259.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0016 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57917..68492
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG03_RS00250 (MPG03_00250) | uvrD | 58608..60653 (+) | 2046 | WP_245021256.1 | DNA helicase UvrD | - |
| MPG03_RS00255 (MPG03_00255) | flgA | 60650..61306 (+) | 657 | WP_245021257.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG03_RS00260 (MPG03_00260) | - | 61316..61879 (+) | 564 | WP_000780124.1 | UbiX family flavin prenyltransferase | - |
| MPG03_RS00265 (MPG03_00265) | coaD | 61879..62352 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG03_RS00270 (MPG03_00270) | tmk | 62354..62929 (+) | 576 | WP_245021258.1 | dTMP kinase | - |
| MPG03_RS00275 (MPG03_00275) | comFC | 62917..63492 (+) | 576 | WP_245021259.1 | ComF family protein | Machinery gene |
| MPG03_RS00280 (MPG03_00280) | - | 63525..65553 (+) | 2029 | Protein_54 | N-6 DNA methylase | - |
| MPG03_RS00285 (MPG03_00285) | - | 65550..66170 (+) | 621 | WP_245021260.1 | restriction endonuclease subunit S | - |
| MPG03_RS00290 (MPG03_00290) | - | 66145..66744 (+) | 600 | WP_245021261.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21443.10 Da Isoelectric Point: 9.2848
>NTDB_id=667788 MPG03_RS00275 WP_245021259.1 62917..63492(+) (comFC) [Helicobacter pylori strain Hpfe0016]
MRCLTCLKFSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKTLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
MRCLTCLKFSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKTLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=667788 MPG03_RS00275 WP_245021259.1 62917..63492(+) (comFC) [Helicobacter pylori strain Hpfe0016]
ATGCGTTGTTTAACTTGTTTAAAGTTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCCTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAGAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTAAAGTTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCCTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAGAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
37.5 |
100 |
0.377 |