Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OG293_RS03560 Genome accession   NZ_CP108867
Coordinates   869759..871048 (-) Length   429 a.a.
NCBI ID   WP_405997283.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00829     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 864759..876048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG293_RS03535 (OG293_03515) egtB 864868..866181 (+) 1314 WP_405997278.1 ergothioneine biosynthesis protein EgtB -
  OG293_RS03540 (OG293_03520) egtC 866181..866936 (+) 756 WP_405997279.1 ergothioneine biosynthesis protein EgtC -
  OG293_RS03545 (OG293_03525) egtD 866933..867895 (+) 963 WP_405997280.1 L-histidine N(alpha)-methyltransferase -
  OG293_RS03550 (OG293_03530) - 867790..868659 (-) 870 WP_405997281.1 lysophospholipid acyltransferase family protein -
  OG293_RS03555 (OG293_03535) - 868656..869489 (-) 834 WP_405997282.1 GNAT family N-acetyltransferase -
  OG293_RS03560 (OG293_03540) clpX 869759..871048 (-) 1290 WP_405997283.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG293_RS03565 (OG293_03545) - 871181..872323 (+) 1143 WP_405997284.1 TetR/AcrR family transcriptional regulator -
  OG293_RS03570 (OG293_03550) - 872360..873067 (-) 708 WP_405997285.1 class F sortase -
  OG293_RS03575 (OG293_03555) - 873216..873713 (-) 498 WP_405997286.1 hypothetical protein -
  OG293_RS03580 (OG293_03560) - 874098..874313 (+) 216 WP_405997287.1 dodecin -
  OG293_RS03585 (OG293_03565) - 874532..875020 (-) 489 WP_405997288.1 HAD family acid phosphatase -
  OG293_RS03590 (OG293_03570) - 875212..876039 (-) 828 WP_405997289.1 tyrosinase family protein -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 46626.40 Da        Isoelectric Point: 4.7474

>NTDB_id=667762 OG293_RS03560 WP_405997283.1 869759..871048(-) (clpX) [Streptomyces sp. NBC_00829]
MAVIGDRGDLPTCTFCGKTQKQVRRLIAGPDRLCICDECVGLCTELIDEDRTEPGGGGPWELPTPREIHDFLGQYVIGQD
TAKKTLAVAVHNHYKRIRARVGGGSLAEDPPVELGKSNILLLGPTGCGKTHLVQTLARMLDVPMAIVDATALTEAGYVGE
DVDSILLKLIQAADNDIRRAETGIVYIDEIDKVARKSENPSITRDVSGEGVQQALLKVLEGAVVSVPPQGGRKQPQQEFI
QIDTANVLFIVGGAFAGLEEIIESRAGAKGIGFGATHLTQAEREERDVFAQVLPQDLIAFGLIPEFVGRLPMVTSVRPLD
RTALMRILTEPRNALIKQYQRLFEIDGVELEFTEDAVGAIAEQALLRRTGARAARAVLEEVLLHVMYEVPSRDDVARVVV
TRDTVLDNVNPTLVPRELPGGPERDERSA

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=667762 OG293_RS03560 WP_405997283.1 869759..871048(-) (clpX) [Streptomyces sp. NBC_00829]
GTGGCAGTCATCGGCGACAGAGGCGACCTGCCGACGTGCACATTCTGCGGCAAGACCCAGAAGCAGGTCAGGAGGCTCAT
AGCGGGTCCGGACAGGCTCTGCATCTGCGACGAATGCGTCGGGCTCTGCACCGAGCTCATCGACGAGGACCGCACCGAGC
CCGGCGGCGGTGGGCCATGGGAGCTCCCGACACCGCGCGAGATCCATGACTTCCTCGGGCAGTACGTCATAGGACAGGAC
ACCGCCAAGAAGACGCTGGCGGTGGCGGTCCACAACCACTACAAGCGCATTCGCGCGCGCGTGGGCGGCGGGTCCCTTGC
GGAGGATCCGCCCGTCGAGCTCGGCAAGTCCAATATCCTGCTGCTCGGCCCGACCGGCTGCGGGAAGACCCATCTCGTCC
AGACGCTCGCCCGCATGCTCGACGTCCCGATGGCGATCGTCGACGCCACGGCGCTCACCGAGGCGGGGTATGTGGGGGAG
GACGTCGACAGCATCCTCCTGAAGCTCATCCAGGCCGCCGACAACGACATCCGCAGGGCCGAGACCGGGATCGTCTACAT
CGACGAGATCGATAAGGTGGCGCGAAAGAGCGAGAACCCGTCGATCACCCGGGACGTGTCGGGGGAGGGCGTCCAGCAGG
CGCTGCTCAAGGTTCTGGAGGGCGCGGTCGTGAGCGTGCCTCCGCAGGGCGGACGCAAGCAGCCCCAGCAGGAGTTCATC
CAGATCGACACGGCGAACGTGCTGTTCATCGTGGGCGGCGCCTTCGCCGGTCTCGAGGAGATCATCGAGTCGCGGGCCGG
AGCCAAGGGCATCGGCTTCGGGGCCACGCACCTTACGCAGGCGGAGCGGGAGGAGCGGGACGTCTTCGCGCAGGTGCTGC
CCCAGGACCTCATCGCGTTCGGGCTGATCCCCGAGTTCGTGGGCCGCCTGCCGATGGTGACGAGCGTACGGCCGCTCGAC
CGCACGGCCCTGATGCGCATCCTCACCGAGCCGCGCAATGCGCTGATCAAGCAGTATCAGCGGCTCTTCGAGATCGACGG
CGTCGAGCTGGAGTTCACCGAGGACGCCGTCGGCGCGATCGCCGAACAGGCGCTGCTCCGCCGGACCGGAGCCCGAGCAG
CCCGCGCGGTCCTCGAAGAGGTACTGCTGCATGTGATGTACGAGGTGCCGAGCCGGGACGACGTGGCCCGGGTCGTGGTC
ACCCGCGACACCGTGCTCGACAACGTCAATCCGACCCTGGTGCCTCGTGAGCTGCCGGGCGGCCCGGAGCGCGACGAGCG
GTCCGCCTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(319-397)

AAA domain (Cdc48 subfamily) (AAA_2)

(116-312)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.11

93.473

0.524
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.058

96.27

0.501