Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG52_RS00010 Genome accession   NZ_CP094157
Coordinates   1597..3021 (+) Length   474 a.a.
NCBI ID   WP_245076684.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0021     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG52_RS00005 (MPG52_00005) dnaA 1..1368 (+) 1368 WP_245076682.1 chromosomal replication initiator protein DnaA -
  MPG52_RS00010 (MPG52_00010) comH 1597..3021 (+) 1425 WP_245076684.1 competence protein Machinery gene
  MPG52_RS00020 (MPG52_00020) - 3202..3954 (+) 753 WP_180497177.1 exodeoxyribonuclease III -
  MPG52_RS00025 (MPG52_00025) - 3951..4586 (-) 636 WP_053576537.1 outer membrane protein -
  MPG52_RS00030 (MPG52_00030) - 4590..4937 (-) 348 WP_097559124.1 hypothetical protein -
  MPG52_RS00035 (MPG52_00035) recG 5019..6890 (+) 1872 WP_245076686.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54297.25 Da        Isoelectric Point: 6.6981

>NTDB_id=667747 MPG52_RS00010 WP_245076684.1 1597..3021(+) (comH) [Helicobacter pylori strain Hpfe0021]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKELHQMPSLNAPMQKPQNKPSSSQQSPQNFSYSESKLGSKNPKNSLLQPLAT
PSKISSANEVKTPTNDTKPTLKHSSEDQENNLFITPPTEKTLPNDTSNADINESNENRDNVEKQAIRDPNIKEFACGKWV
YDDENLQAYRPSILKRVDEDKQTATDITPCDYSYAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQARSSTEK
CKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQAEPTFYETSELAYSSTRKSEITQNELNLNEK
FMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=667747 MPG52_RS00010 WP_245076684.1 1597..3021(+) (comH) [Helicobacter pylori strain Hpfe0021]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACCTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACTTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCTACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCTAGTTCATCGCAACAAT
CTCCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTAGCTACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCACTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACGACACCTCTAACGCTGATATTAATGAAA
GCAATGAGAATAGGGACAATGTGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCATGCGGGAAGTGGGTT
TATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGCGACAGATAT
TACCCCTTGCGATTATAGCTACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACCAAAATCTCTGTTCATAAAA
CAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAATAATTTCGCCATTCTTCAAGCCAGAAGCTCTACGGAAAAA
TGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGATCAGACAATGCTATCTCATAGAAGAGCCTTTAAAACAAGCATGGGA
GAGTGAGTATGAAATCACCACGCAATTAGTAAAAGCCATTTATGAGCGCCCCAAACAAGACGATCAAGCAGAGCCAACTT
TTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCAAAACGAATTGAATTTGAATGAAAAA
TTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATTAAAGAAAGCAGTGAATATAAAGAATGGGT
TAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAACAACCACGAGCCAAAAGCACGCCTT
TGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

93.946

100

0.949

Multiple sequence alignment