Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG09_RS05555 Genome accession   NZ_CP094150
Coordinates   1180673..1181077 (-) Length   134 a.a.
NCBI ID   WP_245026635.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1175673..1186077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG09_RS05515 (MPG09_05515) - 1175855..1176931 (-) 1077 WP_245026624.1 hypothetical protein -
  MPG09_RS05520 (MPG09_05520) - 1176921..1177706 (-) 786 WP_245026625.1 hypothetical protein -
  MPG09_RS05525 (MPG09_05525) - 1177706..1178087 (-) 382 Protein_1079 DUF1294 domain-containing protein -
  MPG09_RS05530 (MPG09_05530) - 1178424..1178585 (-) 162 WP_245026627.1 lysozyme -
  MPG09_RS05535 (MPG09_05535) - 1178605..1178979 (-) 375 WP_245026629.1 lysozyme -
  MPG09_RS05540 (MPG09_05540) - 1179109..1179669 (-) 561 WP_245026631.1 hypothetical protein -
  MPG09_RS05545 (MPG09_05545) - 1179653..1179991 (-) 339 WP_000699916.1 hypothetical protein -
  MPG09_RS05550 (MPG09_05550) - 1180180..1180542 (-) 363 WP_245026633.1 tetratricopeptide repeat protein -
  MPG09_RS05555 (MPG09_05555) dprB 1180673..1181077 (-) 405 WP_245026635.1 Holliday junction resolvase RuvX Machinery gene
  MPG09_RS05560 (MPG09_05560) dprA 1181074..1181874 (-) 801 WP_245026637.1 DNA-processing protein DprA Machinery gene
  MPG09_RS05565 (MPG09_05565) minE 1181886..1182119 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG09_RS05570 (MPG09_05570) minD 1182116..1182922 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG09_RS05575 (MPG09_05575) ilvC 1182941..1183933 (-) 993 WP_231170402.1 ketol-acid reductoisomerase -
  MPG09_RS05585 (MPG09_05585) - 1184188..1184970 (+) 783 WP_245026639.1 NAD+ synthase -
  MPG09_RS05590 (MPG09_05590) - 1184967..1185905 (+) 939 WP_245026641.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15316.91 Da        Isoelectric Point: 8.8525

>NTDB_id=667668 MPG09_RS05555 WP_245026635.1 1180673..1181077(-) (dprB) [Helicobacter pylori strain Hpfe022]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILECYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667668 MPG09_RS05555 WP_245026635.1 1180673..1181077(-) (dprB) [Helicobacter pylori strain Hpfe022]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATACGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGTGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment