Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA79_RS38680 Genome accession   NZ_CP108853
Coordinates   8555494..8556537 (-) Length   347 a.a.
NCBI ID   WP_266979051.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00841     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8550494..8561537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA79_RS38660 (OHA79_38655) - 8551063..8552889 (+) 1827 WP_326793100.1 AMP-dependent synthetase/ligase -
  OHA79_RS38665 (OHA79_38660) - 8552929..8553429 (+) 501 WP_266979057.1 macro domain-containing protein -
  OHA79_RS38670 (OHA79_38665) - 8553708..8554589 (+) 882 WP_266979055.1 oxygenase MpaB family protein -
  OHA79_RS38675 (OHA79_38670) - 8554658..8555464 (-) 807 WP_266979053.1 SAM-dependent methyltransferase -
  OHA79_RS38680 (OHA79_38675) cytR 8555494..8556537 (-) 1044 WP_266979051.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA79_RS38685 (OHA79_38680) - 8556685..8556861 (-) 177 Protein_7647 M1 family peptidase -
  OHA79_RS38690 (OHA79_38685) - 8557051..8559030 (+) 1980 WP_326793101.1 Xaa-Pro dipeptidyl-peptidase -
  OHA79_RS38695 (OHA79_38690) - 8559027..8560319 (+) 1293 WP_326793102.1 M14 family metallocarboxypeptidase -
  OHA79_RS38700 (OHA79_38695) - 8560487..8561449 (-) 963 WP_266979045.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37305.12 Da        Isoelectric Point: 4.8670

>NTDB_id=667669 OHA79_RS38680 WP_266979051.1 8555494..8556537(-) (cytR) [Streptomyces sp. NBC_00841]
MPGPSPDSARDVRPTLEAVAALAGVSRATASRVVNGGAGVRRPLVDQVRKAVEELGYIPNHAARTLVTRRNGAVAVIIDE
PEFRIFSDPFFSRQIRGISRELNVFDAQLVLLLVEGSGDFDRVTRYLAGGHVDGVLAFSLHTDDELPAIIRRFRVPTVYG
GRPGTTGAASEHAVPYVDCDNRGGAIEAVRHLVSLGRQRIAHIAGPRDQTSALDRIDGYLEVLPDADPSLVADGDFTTEG
GARAMAELLARHPDLDAVFASNDLMASGALRVLGEHGRRVPEDVALVGFDDMEQVAEATDPPLTTVRQDVEGMGRLMVRL
LMQRLDGEGEEPDSVITPTELIKRASA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=667669 OHA79_RS38680 WP_266979051.1 8555494..8556537(-) (cytR) [Streptomyces sp. NBC_00841]
TTGCCCGGTCCGAGCCCCGATTCCGCTCGCGATGTCCGTCCCACGCTGGAGGCCGTGGCGGCCCTCGCCGGGGTCTCCAG
GGCGACGGCCTCCCGGGTCGTGAACGGCGGGGCGGGGGTGCGCCGGCCGCTGGTGGACCAGGTCCGCAAGGCGGTCGAGG
AGCTCGGCTACATACCGAACCATGCGGCACGGACCCTGGTCACGCGGCGCAACGGCGCGGTCGCCGTGATCATCGACGAG
CCGGAGTTCCGGATCTTCTCCGACCCGTTCTTCTCCCGCCAGATCCGCGGAATCAGCCGTGAACTGAATGTGTTCGACGC
CCAGTTGGTGCTGCTCCTGGTGGAGGGCAGCGGCGACTTCGACCGGGTCACCCGCTATCTGGCCGGGGGCCATGTGGACG
GTGTGCTGGCATTCTCGCTGCACACCGACGACGAACTTCCCGCGATCATCCGCCGGTTCCGGGTCCCCACGGTCTACGGC
GGCCGCCCCGGCACGACGGGCGCCGCGTCGGAACATGCCGTCCCCTACGTGGACTGCGACAACCGTGGGGGGGCCATCGA
GGCCGTACGCCATCTGGTCTCCCTCGGCCGGCAGCGGATCGCGCACATTGCGGGTCCCCGCGACCAGACGTCGGCGCTCG
ACCGGATCGACGGCTACCTCGAGGTACTGCCGGACGCCGATCCGTCCCTGGTCGCGGACGGTGACTTCACCACCGAGGGC
GGCGCCCGCGCGATGGCCGAGCTGCTGGCGCGCCACCCCGACCTCGACGCAGTGTTCGCGTCCAACGACCTGATGGCGTC
CGGCGCCCTGCGGGTGCTGGGCGAGCACGGCCGACGGGTGCCGGAGGATGTGGCACTGGTGGGCTTCGACGACATGGAGC
AGGTCGCCGAGGCGACCGATCCGCCGTTGACGACGGTCCGTCAGGACGTAGAGGGCATGGGGCGGTTGATGGTTCGTCTG
CTGATGCAGCGGCTGGACGGCGAGGGAGAGGAGCCCGATTCGGTGATCACGCCGACCGAGCTCATCAAGCGGGCATCCGC
CTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(189-346)

Bacterial regulatory proteins, lacI family (LacI)

(15-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.416

99.712

0.363

Multiple sequence alignment