Detailed information NTG0667634

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF84_RS00730
• Genome accession: NZ_CP094149
• Coordinates: 152664..153635 (+)
• Length: 323 a.a.
• NCBI ID: WP_245085845.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe023
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147664..158635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF84_RS00700 (MPF84_00700)	panD	149071..149421 (+)	351	WP_000142210.1	aspartate 1-decarboxylase	-
MPF84_RS00705 (MPF84_00705)	-	149432..149725 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPF84_RS00710 (MPF84_00710)	-	149725..150720 (+)	996	WP_245086718.1	PDZ domain-containing protein	-
MPF84_RS00715 (MPF84_00715)	comB6	150728..151783 (+)	1056	WP_245086721.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF84_RS00720 (MPF84_00720)	comB7	151799..151924 (+)	126	WP_050833158.1	hypothetical protein	Machinery gene
MPF84_RS00725 (MPF84_00725)	comB8	151921..152664 (+)	744	WP_245085843.1	virB8 family protein	Machinery gene
MPF84_RS00730 (MPF84_00730)	comB9	152664..153635 (+)	972	WP_245085845.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF84_RS00735 (MPF84_00735)	comB10	153628..154764 (+)	1137	WP_245085847.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF84_RS00740 (MPF84_00740)	-	154834..156246 (+)	1413	WP_245085849.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF84_RS00745 (MPF84_00745)	gmd	156260..157405 (+)	1146	WP_245085851.1	GDP-mannose 4,6-dehydratase	-
MPF84_RS00750 (MPF84_00750)	-	157398..158330 (+)	933	WP_245085853.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 323 a.a.
• Molecular weight: 37216.82 Da
• Isoelectric Point: 9.4538

>NTDB_id=667634 MPF84_RS00730 WP_245085845.1 152664..153635(+) (comB9) [Helicobacter pylori strain Hpfe023]
MRKVLYALVGFLLAFSTLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSK
KSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKG
KDE

Nucleotide

• Length: 972 bp

>NTDB_id=667634 MPF84_RS00730 WP_245085845.1 152664..153635(+) (comB9) [Helicobacter pylori strain Hpfe023]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGCTAGCTTTTAGCACTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCTATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAATAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCG
TTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAA
AAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAAATTAGC
ACTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATA
TTATCGCTGAAGATGTTTCGGCTAAATGGACTTTAAGGCTAGGTAAGGACTATTTGTGTATCCGCTTTATCAAAAAGGGT
AAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-314)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.479	100	0.954