Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHA79_RS17280 Genome accession   NZ_CP108853
Coordinates   3775500..3776615 (-) Length   371 a.a.
NCBI ID   WP_266985938.1    Uniprot ID   A0ABV5RAM2
Organism   Streptomyces sp. NBC_00841     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3770500..3781615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA79_RS17270 (OHA79_17250) rcrP 3771647..3773380 (+) 1734 WP_266985942.1 ABC transporter ATP-binding protein Regulator
  OHA79_RS17275 (OHA79_17255) - 3773380..3775305 (+) 1926 WP_266985940.1 ABC transporter ATP-binding protein -
  OHA79_RS17280 (OHA79_17260) rpoS 3775500..3776615 (-) 1116 WP_266985938.1 RNA polymerase sigma factor Regulator
  OHA79_RS17285 (OHA79_17265) dnaG 3776814..3778718 (-) 1905 WP_266985936.1 DNA primase -
  OHA79_RS17290 (OHA79_17270) - 3778833..3780092 (-) 1260 WP_266985934.1 FAD-dependent oxidoreductase -
  OHA79_RS17295 (OHA79_17275) - 3780668..3780799 (-) 132 WP_326792261.1 hypothetical protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41731.43 Da        Isoelectric Point: 4.9983

>NTDB_id=667610 OHA79_RS17280 WP_266985938.1 3775500..3776615(-) (rpoS) [Streptomyces sp. NBC_00841]
MQTRTVTTTERVSAVPAQNRAMHHPEAAVDPPTPEPPEPSDIPEAADVMEEQAELPEPPEPRGRPDTGGPSSDLFRQYLR
EIGRIPLLTAADEVELARRVEAGLFAEERLASTPDPDSRLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTM
LDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE
EVAAQLDLTPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLNERERKVVQL
RYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=667610 OHA79_RS17280 WP_266985938.1 3775500..3776615(-) (rpoS) [Streptomyces sp. NBC_00841]
GTGCAGACCCGGACCGTGACCACAACCGAGCGTGTCTCGGCCGTCCCCGCGCAGAACCGGGCCATGCATCATCCGGAGGC
CGCGGTGGACCCGCCGACGCCCGAACCACCCGAGCCGTCAGACATACCCGAGGCAGCCGACGTCATGGAGGAGCAGGCGG
AGCTGCCCGAACCGCCGGAGCCGCGCGGGCGCCCCGACACCGGCGGCCCGTCCTCCGACCTCTTCCGCCAGTATCTGCGG
GAGATCGGACGCATCCCGCTGCTCACCGCCGCCGACGAGGTGGAACTCGCCCGCCGCGTCGAAGCCGGTCTGTTCGCCGA
GGAGCGGCTGGCGAGCACCCCGGACCCGGACTCCCGACTCGCCGTCGATCTGGACCGGTTGGTGGTCATGGGGCGGATGG
CGAAGCGCCGTCTGATCGAGGCGAACCTGCGGCTCGTCGTCTCCGTCGCCAAACGCTACGTCGGCCGCGGGCTGACGATG
CTCGATCTGGTCCAGGAGGGGAACCTCGGACTGATCAGGGCGGTCGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTC
GACGTACGCGACCTGGTGGATCCGGCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCGCGGACCATAAGGGTTCCGGTCC
ATGTCGTGGAGCTGATCAACCGCGTCGTCCGGGTCCAGCGCCGGATGCTCCAGGAGCGCGGCTACGAGCCGACGCCCGAA
GAGGTCGCCGCCCAGCTCGACCTGACGCCGGAACGGGTCGGTGAAGTGCTGCGGCTCGCCCAGGAACCCGTCTCGCTGCA
CGCACCGGTCGGCGAGGAGGACGACGTCGCGCTCGGCGACCTGATCGAGGACGGCGACGCGGCGTCTCCCGTGGAGTCCG
CCGCGTTCCTCCTGCTGCGCGAGCACCTCGAAGCGGTGCTCTCCACCCTGAACGAGCGGGAGCGCAAGGTCGTCCAGCTG
CGCTACGGGCTGGACGACGGCCGGCCCCGCACGCTTGAGGAGATAGGCCGGATCTTCGGCGTGACGCGCGAGCGCATCCG
CCAGATCGAATCAAAGACCCTCAACAAGCTGCGGGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTCGACTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(217-293)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(73-106)

Sigma-70 region 2 (Sigma70_r2)

(138-207)

Sigma-70, region 4 (Sigma70_r4)

(306-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.945

87.871

0.377

Multiple sequence alignment