Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA79_RS17270 Genome accession   NZ_CP108853
Coordinates   3771647..3773380 (+) Length   577 a.a.
NCBI ID   WP_266985942.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00841     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3766647..3778380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA79_RS17235 (OHA79_17215) - 3767287..3767640 (-) 354 WP_266985948.1 VOC family protein -
  OHA79_RS17240 (OHA79_17220) - 3767984..3768838 (+) 855 WP_326792260.1 hypothetical protein -
  OHA79_RS17260 (OHA79_17240) - 3769667..3769972 (+) 306 WP_266990748.1 YtxH domain-containing protein -
  OHA79_RS17265 (OHA79_17245) - 3770033..3771478 (+) 1446 WP_266985944.1 FGGY family carbohydrate kinase -
  OHA79_RS17270 (OHA79_17250) rcrP 3771647..3773380 (+) 1734 WP_266985942.1 ABC transporter ATP-binding protein Regulator
  OHA79_RS17275 (OHA79_17255) - 3773380..3775305 (+) 1926 WP_266985940.1 ABC transporter ATP-binding protein -
  OHA79_RS17280 (OHA79_17260) rpoS 3775500..3776615 (-) 1116 WP_266985938.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62783.96 Da        Isoelectric Point: 5.9320

>NTDB_id=667609 OHA79_RS17270 WP_266985942.1 3771647..3773380(+) (rcrP) [Streptomyces sp. NBC_00841]
MLIKLLRGYLGPYKKPIVLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEYGGIMIAVSIAQVVCNMGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIILALGQDVPLSAV
LLAVVPVLGIAVGLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDPYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVKPVRELRAHGHLEVRGVDFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLLDVTDGQVLVDGTDVR
TLEPTLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEKLEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=667609 OHA79_RS17270 WP_266985942.1 3771647..3773380(+) (rcrP) [Streptomyces sp. NBC_00841]
GTGCTCATAAAACTCCTGCGGGGCTACCTCGGCCCGTACAAGAAACCGATCGTGCTGCTGGTGGCGCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCACTCAACGCCGACATCATTGACAACGGTGTCGTCGAGGGGGACACGGGCTACA
TCCTGGAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACATGGGGGCGGTCTTCTACGGTGCG
CGCACCGCGGCCGCACTCGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
CCGCTTCGGGGCACCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCCTGGCCCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCATCGCGGTGGGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGGGACC
CGTACGAGGAGAAGCGGTTCCGGGGCGCCAACACCGAGCTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCGAGCGTCGTGCCG
CCGGTCAAGCCGGTGCGGGAGCTGCGCGCCCACGGTCATCTGGAGGTGCGGGGTGTGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCACGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGTGGGA
AGTCGACGCTGCTCGGTCTCGTACCGCGGCTGCTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGACACTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGAAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGACAGCGGCTC
GCGATCGCGAGAACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
TGCCGCGCTGCGCGGGGCGCTGTCACGGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGAATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGTACCCATCACGAGCTGATGGACGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.734

99.133

0.404

Multiple sequence alignment