Detailed information NTG0667609

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG61_RS00770
• Genome accession: NZ_CP094148
• Coordinates: 168749..169951 (-)
• Length: 400 a.a.
• NCBI ID: WP_245020510.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe024
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 163749..174951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG61_RS00745 (MPG61_00745)	-	163761..164279 (-)	519	WP_180496587.1	replication regulatory RepB family protein	-
MPG61_RS00750 (MPG61_00750)	-	164276..165220 (-)	945	WP_245020508.1	CpaF/VirB11 family protein	-
MPG61_RS00755 (MPG61_00755)	-	165225..165497 (-)	273	WP_245020509.1	hypothetical protein	-
MPG61_RS00760 (MPG61_00760)	-	165515..166490 (-)	976	Protein_150	hypothetical protein	-
MPG61_RS00765 (MPG61_00765)	-	166503..168765 (-)	2263	Protein_151	collagen-like protein	-
MPG61_RS00770 (MPG61_00770)	comB10	168749..169951 (-)	1203	WP_245020510.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG61_RS00775 (MPG61_00775)	-	169948..171486 (-)	1539	WP_245020511.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG61_RS00780 (MPG61_00780)	-	171483..172652 (-)	1170	WP_245020512.1	VirB8/TrbF family protein	-
MPG61_RS00785 (MPG61_00785)	-	172645..172779 (-)	135	WP_000738749.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44764.50 Da
• Isoelectric Point: 9.9651

>NTDB_id=667609 MPG61_RS00770 WP_245020510.1 168749..169951(-) (comB10) [Helicobacter pylori strain Hpfe024]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGVQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=667609 MPG61_RS00770 WP_245020510.1 168749..169951(-) (comB10) [Helicobacter pylori strain Hpfe024]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGATACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGTGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.435	98.25	0.525