Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG51_RS06810 Genome accession   NZ_CP094145
Coordinates   1429781..1431094 (-) Length   437 a.a.
NCBI ID   WP_245034040.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe028     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1424781..1436094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG51_RS06780 (MPG51_06780) nadC 1425244..1426065 (-) 822 WP_245034031.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG51_RS06785 (MPG51_06785) nadA 1426065..1427075 (-) 1011 WP_245034033.1 quinolinate synthase NadA -
  MPG51_RS06790 (MPG51_06790) - 1427065..1427868 (-) 804 WP_021309132.1 phosphatidylserine decarboxylase -
  MPG51_RS06795 (MPG51_06795) - 1427865..1428368 (-) 504 WP_245034035.1 helix-turn-helix domain-containing protein -
  MPG51_RS06800 (MPG51_06800) - 1428381..1428875 (-) 495 WP_245034037.1 hypothetical protein -
  MPG51_RS06805 (MPG51_06805) mqnP 1428868..1429752 (-) 885 WP_245034038.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG51_RS06810 (MPG51_06810) comEC/comE3 1429781..1431094 (-) 1314 WP_245034040.1 ComEC/Rec2 family competence protein Machinery gene
  MPG51_RS06815 (MPG51_06815) - 1431091..1432557 (-) 1467 WP_245034042.1 replicative DNA helicase -
  MPG51_RS06820 (MPG51_06820) - 1432568..1433962 (-) 1395 WP_245034044.1 NAD(P)H-hydrate dehydratase -
  MPG51_RS06825 (MPG51_06825) crdS 1433965..1435167 (-) 1203 WP_245035052.1 copper-sensing histidine kinase CrdS -
  MPG51_RS06830 (MPG51_06830) crdR 1435133..1435774 (-) 642 WP_231220160.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50088.08 Da        Isoelectric Point: 9.8745

>NTDB_id=667582 MPG51_RS06810 WP_245034040.1 1429781..1431094(-) (comEC/comE3) [Helicobacter pylori strain Hpfe028]
MKDKTFQGAFELLTTPKECLLCGVILSFLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDNL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLVLSFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDGILNMPLMIPTIFVSSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667582 MPG51_RS06810 WP_245034040.1 1429781..1431094(-) (comEC/comE3) [Helicobacter pylori strain Hpfe028]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATGCTTGTTGTGTGGGGTTATTTTAAG
CTTTTTGTTAGCACTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACCAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAATCTTGCTC
ATTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGTGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAACTTG
AATAAAGACTTAAGAGATAGGGCTAACGCACTAGGGATCAACCACTTATTAGCTATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTGTTCTCTCTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGTTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTTCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTTTGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

92.906

100

0.929

Multiple sequence alignment