Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OH821_RS14485 Genome accession   NZ_CP108850
Coordinates   3070407..3071522 (-) Length   371 a.a.
NCBI ID   WP_406419219.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00842     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3065407..3076522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH821_RS14475 (OH821_14435) rcrP 3066557..3068290 (+) 1734 WP_406419215.1 ABC transporter ATP-binding protein Regulator
  OH821_RS14480 (OH821_14440) - 3068290..3070215 (+) 1926 WP_406419217.1 ABC transporter ATP-binding protein -
  OH821_RS14485 (OH821_14445) rpoS 3070407..3071522 (-) 1116 WP_406419219.1 RNA polymerase sigma factor Regulator
  OH821_RS14490 (OH821_14450) dnaG 3071720..3073624 (-) 1905 WP_406419221.1 DNA primase -
  OH821_RS14495 (OH821_14455) - 3073739..3074998 (-) 1260 WP_406419223.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41749.45 Da        Isoelectric Point: 5.0012

>NTDB_id=667537 OH821_RS14485 WP_406419219.1 3070407..3071522(-) (rpoS) [Streptomyces sp. NBC_00842]
MQTRTVTTTERVSAVPAQNRAMHHPEAALDPPTPEPPESSEIPEAADVMEEQAELPEPPEPRGRPDTGGPSSDLFRQYLR
EIGRIPLLTAADEVELARRVEAGLFAEERLASTPDPDSRLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTM
LDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE
EVAAQLDLTPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLNERERKVVQL
RYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=667537 OH821_RS14485 WP_406419219.1 3070407..3071522(-) (rpoS) [Streptomyces sp. NBC_00842]
GTGCAGACCCGGACCGTGACCACAACCGAGCGTGTCTCGGCCGTCCCCGCGCAGAACCGGGCCATGCATCATCCGGAGGC
CGCGCTGGACCCGCCGACACCCGAACCGCCCGAGTCGTCGGAAATACCCGAAGCAGCCGACGTCATGGAGGAGCAGGCGG
AGCTGCCCGAACCGCCGGAGCCGCGCGGGCGCCCCGACACCGGCGGCCCGTCCTCTGACCTCTTCCGCCAGTATCTGCGG
GAGATCGGACGCATCCCGCTGCTCACCGCAGCCGACGAGGTGGAACTCGCCCGCCGCGTCGAAGCCGGTCTGTTCGCCGA
GGAGCGGCTGGCGAGCACCCCGGACCCGGACTCCCGGCTCGCCGTCGATCTGGACCGGTTGGTGGTCATGGGGCGGATGG
CGAAGCGCCGTCTGATCGAGGCGAACCTGCGGCTCGTCGTCTCCGTCGCCAAACGCTACGTCGGCCGCGGGCTGACCATG
CTCGATCTGGTCCAGGAGGGGAACCTCGGACTGATCAGGGCGGTCGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTC
GACGTACGCGACCTGGTGGATCCGGCAGGCCATGTCCCGCGCCCTGGCCGACCAGGCGCGGACCATAAGGGTTCCGGTCC
ATGTCGTCGAGCTGATCAACCGCGTCGTACGGGTCCAGCGCCGGATGCTCCAGGAGCGCGGCTACGAGCCGACGCCCGAA
GAGGTCGCCGCCCAGCTCGACCTGACGCCGGAACGGGTCGGCGAAGTGCTGCGGCTCGCCCAGGAACCCGTCTCGCTGCA
CGCACCGGTCGGCGAGGAGGACGACGTCGCGCTCGGCGACCTGATCGAGGACGGCGACGCGGCGTCCCCCGTGGAGTCCG
CCGCGTTCCTGCTGCTGCGCGAGCACCTCGAAGCGGTGCTCTCCACCCTGAACGAGCGGGAGCGGAAGGTCGTCCAGCTG
CGCTACGGGCTGGACGACGGCCGGCCCCGCACGCTTGAGGAGATAGGCCGGATCTTCGGCGTGACGCGCGAGCGCATCCG
CCAGATCGAATCCAAGACCCTCAACAAGCTGCGGGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTCGACTAG

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(138-207)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(73-106)

Sigma-70 region 3 (Sigma70_r3)

(217-293)

Sigma-70, region 4 (Sigma70_r4)

(306-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.945

87.871

0.377

Multiple sequence alignment