Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OH821_RS14475 Genome accession   NZ_CP108850
Coordinates   3066557..3068290 (+) Length   577 a.a.
NCBI ID   WP_406419215.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00842     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3061557..3073290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH821_RS14430 (OH821_14390) - 3061614..3062537 (-) 924 WP_406419205.1 M56 family metallopeptidase -
  OH821_RS14435 (OH821_14395) - 3062541..3062918 (-) 378 WP_406419207.1 BlaI/MecI/CopY family transcriptional regulator -
  OH821_RS14440 (OH821_14400) - 3063106..3063273 (-) 168 WP_406419209.1 hypothetical protein -
  OH821_RS14445 (OH821_14405) - 3063414..3063728 (-) 315 WP_406419211.1 hypothetical protein -
  OH821_RS14465 (OH821_14425) - 3064577..3064882 (+) 306 WP_406424914.1 YtxH domain-containing protein -
  OH821_RS14470 (OH821_14430) - 3064943..3066388 (+) 1446 WP_406419213.1 FGGY family carbohydrate kinase -
  OH821_RS14475 (OH821_14435) rcrP 3066557..3068290 (+) 1734 WP_406419215.1 ABC transporter ATP-binding protein Regulator
  OH821_RS14480 (OH821_14440) - 3068290..3070215 (+) 1926 WP_406419217.1 ABC transporter ATP-binding protein -
  OH821_RS14485 (OH821_14445) rpoS 3070407..3071522 (-) 1116 WP_406419219.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62782.87 Da        Isoelectric Point: 5.7317

>NTDB_id=667536 OH821_RS14475 WP_406419215.1 3066557..3068290(+) (rcrP) [Streptomyces sp. NBC_00842]
MLIKLLRGYLGPYKKPIVLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEYGGIMLAVSLAQVVCNVGAVFYGA
RTAASLGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIILALGQDVPLSAV
LLAVVPVLGIAVGLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDPYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVKPVRELRAHGHLEVRGVDFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLLDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
SIARTLVRRPEIYLFDDSFSALDYATDAALRGALSRETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=667536 OH821_RS14475 WP_406419215.1 3066557..3068290(+) (rcrP) [Streptomyces sp. NBC_00842]
GTGCTCATAAAACTCCTGCGGGGCTACCTCGGCCCGTACAAGAAACCGATCGTGCTACTGGTGGCGCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATCGACAACGGTGTTGTCGAGGGGGACACGGGCTACA
TCCTGGAGTACGGCGGCATCATGCTCGCCGTCTCCCTCGCCCAGGTCGTCTGCAACGTGGGAGCGGTCTTCTACGGTGCG
CGCACCGCGGCCTCACTCGGCCGGGACGTCCGGGCATCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGCGAGGTCGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTAGGCGGCATCATCCTGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTACTCGGCATCGCGGTGGGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGGGACC
CGTACGAGGAGAAGCGGTTCCGCGGCGCCAACACCGAGCTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAAATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCGAGCGTCGTACCG
CCGGTCAAACCGGTGCGGGAGCTGCGCGCCCACGGTCATCTGGAGGTGCGGGGAGTGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCACGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCGCGGCTGCTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGGCACTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGTTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCATGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGACTC
TCGATCGCGAGAACGCTGGTGCGGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
TGCCGCGCTGCGCGGGGCGCTGTCGCGGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.135

97.747

0.402

Multiple sequence alignment