Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG02_RS07015 Genome accession   NZ_CP094142
Coordinates   1463827..1464108 (-) Length   93 a.a.
NCBI ID   WP_020971705.1    Uniprot ID   A0A1A9HAK9
Organism   Helicobacter pylori strain Hpfe033     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1458827..1469108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG02_RS06995 (MPG02_06995) - 1459537..1460877 (-) 1341 WP_180406650.1 hypothetical protein -
  MPG02_RS07005 (MPG02_07005) comB4 1461198..1463561 (-) 2364 WP_245075303.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG02_RS07010 (MPG02_07010) comB3 1463564..1463827 (-) 264 WP_048944994.1 hypothetical protein Machinery gene
  MPG02_RS07015 (MPG02_07015) comB2 1463827..1464108 (-) 282 WP_020971705.1 TrbC/VirB2 family protein Machinery gene
  MPG02_RS07020 (MPG02_07020) - 1464253..1465080 (-) 828 WP_154423423.1 DUF5718 family protein -
  MPG02_RS07025 (MPG02_07025) - 1465171..1466223 (-) 1053 WP_021306479.1 MnmA/TRMU family protein -
  MPG02_RS07030 (MPG02_07030) dnaG 1466220..1467899 (-) 1680 WP_245075304.1 DNA primase -
  MPG02_RS07035 (MPG02_07035) groES 1468174..1468530 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10521.78 Da        Isoelectric Point: 9.1450

>NTDB_id=667525 MPG02_RS07015 WP_020971705.1 1463827..1464108(-) (comB2) [Helicobacter pylori strain Hpfe033]
MSAHFLKIIFLVGLCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667525 MPG02_RS07015 WP_020971705.1 1463827..1464108(-) (comB2) [Helicobacter pylori strain Hpfe033]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCTTGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(5-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9HAK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment