Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG02_RS07010 Genome accession   NZ_CP094142
Coordinates   1463564..1463827 (-) Length   87 a.a.
NCBI ID   WP_048944994.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe033     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1458564..1468827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG02_RS06995 (MPG02_06995) - 1459537..1460877 (-) 1341 WP_180406650.1 hypothetical protein -
  MPG02_RS07005 (MPG02_07005) comB4 1461198..1463561 (-) 2364 WP_245075303.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG02_RS07010 (MPG02_07010) comB3 1463564..1463827 (-) 264 WP_048944994.1 hypothetical protein Machinery gene
  MPG02_RS07015 (MPG02_07015) comB2 1463827..1464108 (-) 282 WP_020971705.1 TrbC/VirB2 family protein Machinery gene
  MPG02_RS07020 (MPG02_07020) - 1464253..1465080 (-) 828 WP_154423423.1 DUF5718 family protein -
  MPG02_RS07025 (MPG02_07025) - 1465171..1466223 (-) 1053 WP_021306479.1 MnmA/TRMU family protein -
  MPG02_RS07030 (MPG02_07030) dnaG 1466220..1467899 (-) 1680 WP_245075304.1 DNA primase -
  MPG02_RS07035 (MPG02_07035) groES 1468174..1468530 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10090.20 Da        Isoelectric Point: 9.5507

>NTDB_id=667524 MPG02_RS07010 WP_048944994.1 1463564..1463827(-) (comB3) [Helicobacter pylori strain Hpfe033]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667524 MPG02_RS07010 WP_048944994.1 1463564..1463827(-) (comB3) [Helicobacter pylori strain Hpfe033]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTCGTGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment