Detailed information
Bioinformatically predicted
Overview
| Name | comB9 | Type | Machinery gene |
| Locus tag | MPG02_RS00700 | Genome accession | NZ_CP094142 |
| Coordinates | 147132..148100 (+) | Length | 322 a.a. |
| NCBI ID | WP_245075426.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe033 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 142132..153100
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG02_RS00670 (MPG02_00670) | panD | 143539..143889 (+) | 351 | WP_245075425.1 | aspartate 1-decarboxylase | - |
| MPG02_RS00675 (MPG02_00675) | - | 143900..144193 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG02_RS00680 (MPG02_00680) | - | 144193..145188 (+) | 996 | WP_245075895.1 | PDZ domain-containing protein | - |
| MPG02_RS00685 (MPG02_00685) | comB6 | 145196..146251 (+) | 1056 | WP_245075896.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG02_RS00690 (MPG02_00690) | comB7 | 146267..146392 (+) | 126 | WP_120902658.1 | comB7 lipoprotein | Machinery gene |
| MPG02_RS00695 (MPG02_00695) | comB8 | 146389..147132 (+) | 744 | WP_180446597.1 | virB8 family protein | Machinery gene |
| MPG02_RS00700 (MPG02_00700) | comB9 | 147132..148100 (+) | 969 | WP_245075426.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG02_RS00705 (MPG02_00705) | comB10 | 148093..149229 (+) | 1137 | WP_245075427.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG02_RS00710 (MPG02_00710) | - | 149299..150711 (+) | 1413 | WP_245075428.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG02_RS00715 (MPG02_00715) | gmd | 150726..151871 (+) | 1146 | WP_220977763.1 | GDP-mannose 4,6-dehydratase | - |
| MPG02_RS00720 (MPG02_00720) | - | 151864..152796 (+) | 933 | WP_245075429.1 | GDP-L-fucose synthase | - |
| MPG02_RS07525 | - | 152785..152916 (-) | 132 | WP_001871457.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 322 a.a. Molecular weight: 36968.60 Da Isoelectric Point: 9.3713
>NTDB_id=667510 MPG02_RS00700 WP_245075426.1 147132..148100(+) (comB9) [Helicobacter pylori strain Hpfe033]
MRKVLCALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALEKAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKK
SKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGK
DE
MRKVLCALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALEKAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKK
SKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGK
DE
Nucleotide
Download Length: 969 bp
>NTDB_id=667510 MPG02_RS00700 WP_245075426.1 147132..148100(+) (comB9) [Helicobacter pylori strain Hpfe033]
ATGCGTAAGGTTTTATGTGCTCTTGTGGGTTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAGGAAGC
TAACGAAACAGCTCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAACTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATGCTCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACCATTGGTGATAACACTAATGCAATGAAAATCGTTA
AAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGTTCTAAAAAA
TCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCT
CTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGTTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTA
TCGCTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAA
GATGAATAA
ATGCGTAAGGTTTTATGTGCTCTTGTGGGTTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAGGAAGC
TAACGAAACAGCTCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAACTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATGCTCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACCATTGGTGATAACACTAATGCAATGAAAATCGTTA
AAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGTTCTAAAAAA
TCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCT
CTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGTTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTA
TCGCTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAA
GATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB9 | Helicobacter pylori P1 |
95.092 |
100 |
0.963 |