Detailed information NTG0667448

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG35_RS00705
• Genome accession: NZ_CP094138
• Coordinates: 151195..152157 (+)
• Length: 320 a.a.
• NCBI ID: WP_245019680.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe037
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146195..157157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG35_RS00675 (MPG35_00675)	panD	147605..147955 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG35_RS00680 (MPG35_00680)	-	147965..148258 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG35_RS00685 (MPG35_00685)	-	148258..149253 (+)	996	WP_245019996.1	PDZ domain-containing protein	-
MPG35_RS00690 (MPG35_00690)	comB6	149259..150314 (+)	1056	WP_245019997.1	type IV secretion system protein	Machinery gene
MPG35_RS00695 (MPG35_00695)	comB7	150330..150455 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG35_RS00700 (MPG35_00700)	comB8	150452..151195 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPG35_RS00705 (MPG35_00705)	comB9	151195..152157 (+)	963	WP_245019680.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG35_RS00710 (MPG35_00710)	comB10	152150..153286 (+)	1137	WP_245019681.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG35_RS00715 (MPG35_00715)	-	153356..154768 (+)	1413	WP_245019682.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG35_RS00720 (MPG35_00720)	gmd	154782..155927 (+)	1146	WP_120902685.1	GDP-mannose 4,6-dehydratase	-
MPG35_RS00725 (MPG35_00725)	-	155920..156852 (+)	933	WP_245019683.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36854.46 Da
• Isoelectric Point: 8.9399

>NTDB_id=667448 MPG35_RS00705 WP_245019680.1 151195..152157(+) (comB9) [Helicobacter pylori strain Hpfe037]
MCKILCTLVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQESFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667448 MPG35_RS00705 WP_245019680.1 151195..152157(+) (comB9) [Helicobacter pylori strain Hpfe037]
ATGTGTAAGATTTTATGCACTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGAGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAACCGCAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGCAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.934